barSeed - Barley Seed Development Database

Probe CUST_39873_PI390587928

Source Contig U35_7878

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_39873_PI390587928	Hv_44K_v2	AACTCGTTGACACCAATACATCGTACTCCTGTTAATCGAGGTCCATCGTTTCGATCATCG	714	GeneList: blue MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	1.482	1.475	1.110	0.925	0.387	0.358
Raw	1935.673	3078.937	2012.880	2629.548	387.878	388.969

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_18425.1	1088	3e-22	1008 - 1063	100	56 / 56	plus	ABC16161
JLOC1	JLOC1_12755.1	1033	1e-22	912 - 967	100	56 / 56	plus
Harvest21	ABC16161	779	3e-25	6 - 65	100	60 / 60	minus	ABC16161
Harvest21	ABC34018	671	2e-21	614 - 669	98	55 / 56	plus
Harvest35	U35_7878	779	3e-25	715 - 774	100	60 / 60	plus
Harvest35	U35_9310	723	2e-21	666 - 721	98	55 / 56	plus

Contig Sequence (779 bp)

>U35_7878 779 Hv_44K_v2
CGAGGCGAGTCGGTGGCCGACCCATGTACCGGATGGGATGTATGGCGCTCGTCGCCGCCG
ACCTTCCGGCCGGCGTCAACCGCGATAGGTGTGTGAAAATGGCGATTGTGCATGACATAG
CCGAAGCTATTGTTGGCGATATCACGCCTGTTGATGGTGTGCCCAAGGAAGAGAAGAGCC
GTAGAGAGAAGGAAGCTTTGGACCATATGTGCACATTGCTTGGTGGAGGTTCAAGAGCCG
ACGAAGTTCGTGAGCTTTGGATGGAGTATGAGAACAATGCCACTTTGGAAGCGAAGGTCG
TCAAAGATTTTGACAAGGTTGAGATGATACTTCAAGCACTGGAATACGAAAAGGAGCAAG
GGCATGACCTAGAAGAGTTCTTCCAATCGACGGCAGGGAAATTCCAAACAGACGTCGGAA
AAGCATGGGCAGCAGAGGTCGCATCGAGAAGAAAGTGAAAACAACTGATCAAATGGCAAA
GTCACGAGCCCTCTCGGTGCTTCTTTTTTCGGACACAATTGTCAGCGCCGGATCTGTACC
ATGTTTCACTCCAGGGCCTTTCTTAGCCCTGTGGCAAACCGGCCTCCCAACTCGATTAGG
GCCCTCCAGATCAGCCAGTTGTATTGCAAAGCGGGTCTTTTTTACTTGTAGTTCGCCTGG
CCATGCCCAGCACCAAGTTGGTAGGATCAGCCCCTTTCTGATGTAAAATATGTTAACTCG
TTGACACCAATACATCGTACTCCTGTTAATCGAGGTCCATCGTTTCGATCATCGGTAAC

Homology of Contig U35_7878 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os02g08260.1	229	6e-90	protein\|HD domain containing protein 2, putative, expressed
Brachypodium v1_2	Bradi3g05900.1	244	1e-92
Arabidopsis v10	AT2G23820.2	257	2e-73	Metal-dependent phosphohydrolase \| chr2:10140595-10142672 FORWARD LENGTH=257