barSeed - Barley Seed Development Database

Probe CUST_39868_PI390587928

Source Contig U35_7883

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_39868_PI390587928	Hv_44K_v2	CCCGGAGAGCATTTTTGTGTGGTATTTTGTACATTCATCAATATCTGATCATTTGTCAAA	914	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_54940.2	5678	6e-24	5486 - 5544	100	59 / 59	plus	ABC15671
MLOC	MLOC_54940.1	6168	6e-24	5976 - 6034	100	59 / 59	plus	ABC15671
JLOC1	JLOC1_35397.1	5952	3e-24	5793 - 5851	100	59 / 59	plus
Harvest21	ABC15671	988	3e-25	15 - 74	100	60 / 60	minus	ABC15671
Harvest35	U35_7883	988	3e-25	915 - 974	100	60 / 60	plus

Contig Sequence (988 bp)

>U35_7883 988 Hv_44K_v2
GGCAGCAGCAAACAGTCTCCTGCTGAGCTAGTGGTTGTGAAAGAGCTGAGCATTGTGAAC
CAAGAGCTACCAAGGTCCATCACCACGGAGCCGCACCAGGAGTGGAAGAACAAGGTGATT
CAAAGGCTATCTTCTGACGGGAAGAGGCTCAACACCCTCCAGTCCAGCATTCAAGAGCTC
AAAACAAACACCGAGGCGTCAGAAGAGAGCGAGCTCGAGGACGTCAGGTACCAAATAAAG
GAAGCCGAGAGCACCATCATCGAGCTGATCGACACCAACAGTAAGCTGGCCAAGAAGGCC
GAAGAGTTCACGTCGGCCGACGGTCTCGACGGGGACAACATTGACCTGAGGAGCAGGCAC
CAGCGCAAGATCCTGGAGCGTGCAAGGAAGATGTCAGAGAAGATTGGGAGGCTGGAGGTG
GAAATGCAGAAGGTCCAGCAGGCCCTGGTGAAGTATGAGGAGGAGCAGACAAGCAGCGCG
ACGTCGAAAACCGTGCATCATCGGTCCAAGGTGCAGCTGGTGGACTATCTCTACGGGCGA
AGGCGGGAGAATCGGAAGCCGCGATGCTCACCCTGCGGTTGCATGAGAGCGAAAACCATC
GATGACTAATTCGGCCTTCGTTCGCGCCGCTCCTTTTTTGAAGGCGGAGTAGGGAAGGCT
GGAGTTTTCAGTTTCAGATGGCGCGACTCATTATTAGTTCATGTTTTTCTAGGTAAATAC
AGAAAAAAGAAGTGGTAATGTAAGGGTTGTAAATGGTAGTCATTGACTGTAAGCATCTGC
TATAAACTTACTGCCGGGCTTGTAAAATCACTGCTAACATTTGCTGCGTGTAGCTTTGCG
CCGGCCCTGCATCGTCCCGGGTGAACATTACAGTGGAAATTGTTTGTAAACAAGAGAGGG
CATAGAAATAAGTACCCGGAGAGCATTTTTGTGTGGTATTTTGTACATTCATCAATATCT
GATCATTTGTCAAAAAAAAAAAAAAAAA

Homology of Contig U35_7883 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os03g43684.1	1536	1e-95	protein\|KIP1, putative, expressed
Brachypodium v1_2	Bradi4g23910.1	1532	3e-100
Arabidopsis v10	None