barSeed - Barley Seed Development Database

Probe CUST_39864_PI390587928

Source Contig U35_7887

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_39864_PI390587928	Hv_44K_v2	GGACATGGTTCATATGAATGAATGAATGCAGTGAAAACATCTTTCTACTCTGCAGTATAA	1179	GeneList: darkslateblue MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	1.776	2.258	1.565	0.682	0.247	0.340
Raw	691.144	1336.641	844.597	562.230	70.522	108.074

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_21671.1	2259	3e-22	87 - 145	98	58 / 59	minus	None
MLOC	MLOC_21671.2	1994	3e-22	87 - 145	98	58 / 59	minus	None
JLOC1	JLOC1_15027.5	1817	1e-22	1710 - 1768	98	58 / 59	plus
JLOC1	JLOC1_15027.4	1916	1e-22	1809 - 1867	98	58 / 59	plus
JLOC1	JLOC1_15027.3	1816	1e-22	1709 - 1767	98	58 / 59	plus
JLOC1	JLOC1_15027.2	1712	1e-22	1605 - 1663	98	58 / 59	plus
JLOC1	JLOC1_15027.1	1712	1e-22	1605 - 1663	98	58 / 59	plus
Harvest35	U35_7887	1254	3e-25	1180 - 1239	100	60 / 60	plus

Contig Sequence (1254 bp)

>U35_7887 1254 Hv_44K_v2
GCTGGATGCAGCTAGTTCGTGTACTATTGACTTGGGCGAAATCTGCTCTCCAAACATTCC
TGATGCCCTTGTCGAGAAGACTCTAGTCAAAACAATTATGAACACTCCAAAGATTAGCGA
CAAGCTGAGAGAGATATCAAACTCACTGAAGCTTCTTAATGCTCGTCCATTGAGCGTAAT
GCCACAGAAAATAGCCATGGAAAAGACACAAGAACAGGGCATGGAGAAGACACAGAAAGT
GGCCATGGAACCAGCACAAGAAGTGGGCATGAAAACGGCACAAGAAGTGGACATGGAGAC
GACACAAGAAGTGAGTAAGGAAAGGACACAAGAAGTGGGCATGGAGACTACACAAGAAGT
GGGCATGGAGACGACACAAGAAGTGGCTGTTGAAACAACACAAGCAGTGGGTGTAGAAAC
AACACAAGAACTTGTCATTGAAACGACACAAGAAGTGGCTGTTGAAACGACACAAGAAGT
GGCTGTTGAAACAACAGAAGAAGTTTCCATTAACACGACAGAAGAAGTTGCCATTAAAAC
GACACAAGAAGTGGCTGTTGAAACAACAAAAGAAGTGGTCATGGAAAATGTCCAGGGTGT
GACCAACATAGATGCTGCAGCTGAACCAAAGACGCCTGCTTTGCACCTCAAGCTTGAGCA
AGCAGCAGATACAAAGGCTCCTGGGATACACCTCAAGTTTGAGCAGGCAGCAGATCATCC
AGCCAGTTCATTCAAGACTCCAAGCACCGGGATAAAGAGATCCATAGTTCAGGAGTGCAT
GAATTTTCTCAACAGCGCTAACAAGGAGCAATTAAAGAGCTTGAAGGGCATCGGAGAGAA
AAGAGCCAATTACATAATTAAGCTTCGCGAGCATTCGCCGGAGCTGTTCAAAGGGATAGA
CGATCTCAGGGATGTGATTGGGATGAACAAAAGGGAGATAAATAATATGATGTCGGGGAT
CATCACCGACAGCCCCTAACCATCCTGATGGGATGGTGGAGTGGATGGAATCCTATCTAA
TTTCTGCATAGGGAGGGATGGAAGGATGAGTAGTACAACGGTTCTTGTTGTTGAGACAGA
TAGAGAGAGTGCCACTGGCTTTCACTAGTAGTAGGAGCTACTACTACATTATAACTTGTT
TTTTTGTTGGTGTTTGGATTGGAGGTTTGTGTATTTTGTGGACATGGTTCATATGAATGA
ATGAATGCAGTGAAAACATCTTTCTACTCTGCAGTATAAAAAAAAAAAAAAAAA

Homology of Contig U35_7887 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	None
Brachypodium v1_2	None
Arabidopsis v10	None