barSeed - Barley Seed Development Database

Probe CUST_39863_PI390587928

Source Contig U35_7888

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_39863_PI390587928	Hv_44K_v2	TTCGTCTGTTTCCAAAGACATAGTAGTACAGAACAAGTTTACATACGTGCAATTTCTGAA	473	GeneList: yellow MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	4.007	4.347	1.389	0.661	0.330	0.227
Raw	127.491	215.530	60.530	45.781	7.315	5.582

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_77511.2	3298	2e-24	3225 - 3284	100	60 / 60	plus	ABC17486
MLOC	MLOC_77511.3	3709	2e-24	3637 - 3696	100	60 / 60	plus	ABC17486
MLOC	MLOC_77511.4	3673	2e-24	3601 - 3660	100	60 / 60	plus	ABC17486
MLOC	MLOC_77511.1	3233	2e-24	3174 - 3233	100	60 / 60	plus	ABC17486
JLOC1	JLOC1_51697.3	3504	8e-25	3308 - 3367	100	60 / 60	plus
JLOC1	JLOC1_51697.2	3642	8e-25	3446 - 3505	100	60 / 60	plus
JLOC1	JLOC1_51697.1	3390	8e-25	3194 - 3253	100	60 / 60	plus
Harvest21	ABC17486	548	3e-25	53 - 112	100	60 / 60	minus	ABC17486
Harvest35	U35_7888	585	3e-25	474 - 533	100	60 / 60	plus

Contig Sequence (585 bp)

>U35_7888 585 Hv_44K_v2
AGCATGTACACCAAGTGGGGAGTTTCGCTGTCCTCCAAGAGGAGAAGGCTTCAGGTGGCT
CGTCGCCTTTGGACCGAAACCAAAAACCTCGAGCATGTGAGGGAGAGCGCTTCCCTTGTT
GCCCGATTGATCGGCCTCCTGGAGCCAGGAAAGGCGCTGAGGGAGATGTTTGGGCTAAGC
TTTGCGCCGCAGCAGTTCAGCCGACGATCCCACAATAGCTGGAGATATGGCCGTTCTTCC
CTGGACTGATTATGAGATGCAAATGAACACAAAAGGTTTTCATTGTTCCCTTGTCCTCCC
CCACCCCCCGCCTCACCTCGCCTTGGTGGGTATAGAATTATAGGAGCGTTGTTAGTTGTA
GCTTATAGGCCCTTCAATGTGTTTCTGTATGATATTGTAGTGCGTTGGAAAACCCTGTCT
ACTGCGCTGGGAGATCAAACATGTAAGATCCTGTAAGTTTGATACGAGGTGTGTTCGTCT
GTTTCCAAAGACATAGTAGTACAGAACAAGTTTACATACGTGCAATTTCTGAAAGAAACA
TTCAACATAGATTGCTATCAGTCTTTACAAAAAAAAAAAAAAAAA

Homology of Contig U35_7888 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	None
Brachypodium v1_2	None
Arabidopsis v10	None