barSeed - Barley Seed Development Database

Probe CUST_39860_PI390587928

Source Contig U35_7891

barSeed

Links

Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_39860_PI390587928	Hv_44K_v2	CTCTTTACATCAGCCCACTGTGTAAAGTCTGAAGCAAGATTGTAAATGTTATATATACAC	938	GeneList: midnightblue MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	0.134	0.218	0.354	2.329	2.645	4.088
Raw	30.968	73.579	114.978	1240.188	467.439	788.162

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
JLOC1	JLOC1_33793.1	1228	8e-25	1065 - 1124	100	60 / 60	plus
Harvest21	ABC36066	421	3e-25	323 - 382	100	60 / 60	plus	ABC36066
Harvest35	U35_7891	1042	3e-25	939 - 998	100	60 / 60	plus

Contig Sequence (1042 bp)

>U35_7891 1042 Hv_44K_v2
CGTCTGGCTCGGCTGAGAGGGACAGAGATAGACAGAGAGGAGGTGGGGGCGGAGGCGGCG
CCGTCACTCTCTGCTCTTCCGCTCGTCTCACAAGGCGGCAGGCAAGGGAAGCGTCACAAT
TCAGCAATGGCAGCTCCCAATACCTACGCAGTCCATGTCTCCTCGGAGACCCATAAGATC
GAGGCCTGGTGCGAATCGGACGAGGCTTTGGCCAGGCAACTGCAAGAGGAGGAGGACTCG
CTCGCCATTAGGGAATTCGCTGGCAGCGTATCCTTGGAACCATCATCACCAGCTGTTGAG
TACAGGCCTGCCAATAATGCAGCCCAGGTGGCAACAGAGGATAATGTCGACCCGGATAAT
ATGTCATACGAGCAACTACAAGCAATCGGTGAAGAGGTAGGAACTCAATCCAGAGGATTA
TCTGATGACCTGATAAGCTACCTGGAGCCTTTTAGGAACAAATGTAACTTCTTCTCGAGC
AAAAAGAATACCGATGAATGCGTGATCTGCAAATCGAACTATAAAAGCCGAGAGAAGTTG
ATAAGGCTGCCCTGCAGCCATTGTTACCATGCAGGTTGCATAACTCGCTGGCTTAAGATT
AACAAGGCATGCCCAGTCTGCAATGAGGAGGTATTCGGTTAACTTGCGATGTTTGTGGAG
ATGGTGTGGACTCGTCGCCGCGTGATGATAATGGACAATCTTGCTCTCCTATGGCCTATT
ATGCTATATATATATAATTCTCGATGGTGTGTCGACTGTCGTGCTTTAAGAAAAAATGTA
TTTTGGATCATGCCATGTTTGATGTCCCCCAACTTAGTTTTGTCATTAAAATGATGATAA
ATATGTGCGGGCAGTGGGTTATATGGTTTGCAATTTTCCGAGAATGCAACCGAGCAGGAG
CAGTTCAGTAGGTGATCTGGTTTGTCAAGTATTGCACCCTCTTTACATCAGCCCACTGTG
TAAAGTCTGAAGCAAGATTGTAAATGTTATATATACACATATATAGGACATGCATTTTCT
ACTCCAAAAAAAAAAAAAAAAA

Homology of Contig U35_7891 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os09g35690.1	175	1e-103	protein\|zinc RING finger protein, putative, expressed
Brachypodium v1_2	Bradi4g35710.3	175	1e-107
Arabidopsis v10	None