barSeed - Barley Seed Development Database

Probe CUST_39849_PI390587928

Source Contig U35_12903

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_39849_PI390587928	Hv_44K_v2	TTTCTGACTTAGTGGCCTCATCTCAAAGAGAGAGGTGGTCAGTTGAAAGTGAGCTCTTTG	372	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_54402.3	2579	2e-24	1501 - 1560	100	60 / 60	plus	ABC45977
MLOC	MLOC_54402.1	1661	2e-24	1013 - 1072	100	60 / 60	plus	ABC45977
MLOC	MLOC_54402.5	1975	2e-24	897 - 956	100	60 / 60	plus	ABC45977
MLOC	MLOC_54402.4	2151	2e-24	1011 - 1070	100	60 / 60	plus	ABC45977
MLOC	MLOC_54402.2	2161	2e-24	1502 - 1561	100	60 / 60	plus	ABC45977
JLOC1	JLOC1_35013.4	2821	8e-25	1500 - 1559	100	60 / 60	plus
JLOC1	JLOC1_35013.3	2344	8e-25	1011 - 1070	100	60 / 60	plus
JLOC1	JLOC1_35013.2	2334	8e-25	1013 - 1072	100	60 / 60	plus
JLOC1	JLOC1_35013.1	2836	8e-25	1503 - 1562	100	60 / 60	plus
Harvest21	ABC26329	432	3e-25	373 - 432	100	60 / 60	plus
Harvest35	U35_12903	433	3e-25	373 - 432	100	60 / 60	plus

Contig Sequence (433 bp)

>U35_12903 433 Hv_44K_v2
CTACAGCGAGCAATTCACTTCCTGAGGCAAAGTCCTGCAAATCATCACATATGGTAAATG
TTGCTTCAGACATCAAGACATCAAAATCCCTTCCTTCAACGCCACCCATAGTATCCAGAT
CAGATCCTTCATCCTCTAGGTGTCATTCTCTTCACGTGGACTCATTCTCAATGAGGAAAG
CACGTCGATCACCTGGACATCAACTATGTAGACAGATCTCGGACAGCAAGATCCCATCTC
TCAAGTCCTTCAGTGAGAGTAGCTATGCAGGAGGAAGGCCGTCGAGTTCAATGCTCTCGA
CCTGCAGTAATGATCCATTTGGAGGAGGATCACAACATGGGGGATCATCGGATGGGTGGT
CAACTCGCACATTTTCTGACTTAGTGGCCTCATCTCAAAGAGAGAGGTGGTCAGTTGAAA
GTGAGCTCTTTGG

Homology of Contig U35_12903 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value
Rice v7	None
Brachypodium v1_2	Bradi2g09510.1	428	3e-55
Arabidopsis v10	None