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Probe Details

Probe IDChipProbe Sequence (60 bp)Probe locationDifferentially Expressed
CUST_39844_PI390587928Hv_44K_v2ATGTTTTCCTTATTCTGTAGCAACAGAATGTTTGTTGATCCGAGGTCTCAGCTCTCCCCC798GeneList: turquoise
MasterList: None



Probe Values

3 dpa4 dpa5 dpa6 dpa7 dpa8 dpa
Normalized 1.5281.3711.1790.9550.3990.381
Raw 4240.6336085.2674482.4335693.990827.515873.564



Probe Sequence's BLAST hits in Barley Unigene Datasets

DatasetHitHit LengthE-valuePosition on Hit% IdentityMatchDirectionProbes on Sequence
MLOCMLOC_73094.115992e-241448 - 150710060 / 60plus None
MLOCAK37388217913e-211647 - 17069758 / 60plus None
JLOC1JLOC1_48643.116598e-251427 - 148610060 / 60plus
Harvest21ABC229468993e-25799 - 85810060 / 60plus
Harvest35U35_129118993e-25799 - 85810060 / 60plus



Contig Sequence (899 bp)

>U35_12911 899 Hv_44K_v2
GGGCACGAGGGGAGAAGAGCACCCCGGACTCGCGGTTGGGCGGCACCTTTGGTGTTGTCG
TGCAGAGCTTAGGGACCCTCGATAGAGATCAGAAAGAGCACANNNAAGCATGTAGAAGTG
TCCAGCATTGGGCCCTATTTGCAAATATCGGTGGAAAGCCGCTGCCGGAGTACATGCTGA
GCAATCTTCCGCCGCAGGAAGAGTTGCTAGAGAGGTATTTCCATCCTGACCACATGTCGG
GCGAAGAGAAGATGAAATTNNAGCTTCAGAAGGTCAGGGATGAGTTCAAGATGTCCGANA
ATGACTGTGGTTCCGCACGAGTTCAAATAGCCCAACTGACACTAAAAATCAAGCACTTGT
CAACTGTTCTACACAAAAAGGACAAGCACTCTCGAAAGGGGCTCCAGGACATGGTCCAGA
GAAGGAAGAAGTACCTCAAGTACCTGCGTAGGACCGACTGGGACTCGTACTGCCTCGTCC
TGTCGAAGCTGGGGCTCCGCGACACGCCCGAGTACAAGGCGCCCGACTACAAGAAGACCC
AGCCGAGCAAGGCGCAGTCGAAGAAGAGCAAGAGCAAGAGGAAGAGAAAGATGAAGGCGT
AGAGCTCCGCTGCGCGGGGCAGATGATGACTCTCCACACTCTTCTCCTTCCCTTTGGCCT
TGAGAACTCCGTTGGCGGTAGAATCCATCGGGTCGACAGGCACAGAGGCTCCACATGTCT
CGGCCCAGCCCGGTCTTTGCAGTGTTGTAATTTTTTGATCCACTTCTTATGTAATAACCA
GTCGCTTGACATAGCTGCATGTTTTCCTTATTCTGTAGCAACAGAATGTTTGTTGATCCG
AGGTCTCAGCTCTCCCCCGTCCTGTTATCATCAGGCGAATGGATTGAGGAACAAACGGG



Homology of Contig U35_12911 to Model Species (E-value threshold 1e-50)

Pseudo-peptide datasetHitHit lengthE-valueDescription
Rice v7LOC_Os02g55940.14488e-69protein|ribosomal protein S15 containing protein, expressed
Brachypodium v1_2Bradi3g54420.14613e-80
Arabidopsis v10None