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Probe Details

Probe IDChipProbe Sequence (60 bp)Probe locationDifferentially Expressed
CUST_39834_PI390587928Hv_44K_v2TTCATGATATGGTAACTATGACTAATCAACTCCAGAACAACAGCTTGGAAAGAGTATCAT598GeneList: lightcyan
MasterList: None



Probe Values

3 dpa4 dpa5 dpa6 dpa7 dpa8 dpa
Normalized 0.9901.1571.7501.5800.5450.668
Raw 40.49274.62497.267140.77717.29122.448



Probe Sequence's BLAST hits in Barley Unigene Datasets

DatasetHitHit LengthE-valuePosition on Hit% IdentityMatchDirectionProbes on Sequence
MLOCAK35743512483e-21640 - 6999758 / 60plus ABC32634
MLOCAK36664912353e-21601 - 6609758 / 60plus ABC32634
MLOCMLOC_73122.112243e-21588 - 6479758 / 60plus ABC32634
MLOCMLOC_73122.211673e-21588 - 6479758 / 60plus ABC32634
JLOC1JLOC1_48665.218512e-21586 - 6459758 / 60plus
JLOC1JLOC1_48665.117962e-21588 - 6479758 / 60plus
Harvest21ABC285711643e-25102 - 16110060 / 60plus
Harvest35U35_129236613e-25599 - 65810060 / 60plus



Contig Sequence (661 bp)

>U35_12923 661 Hv_44K_v2
GACATCTCCCAATAAAACGCCACCGCCCCACTCGTCGGAGCCGGCCGCCGGGATGCCTCA
AGATTCGCGCCCGCCAGGGATGCGCCTCTTCGGCGTCACCATTGCGCCGGCGCCGGCGCC
GCACTTGGATCCCCCGGACGGTGACCGGGATCCGAGCCCCAACCCACCGGTGGCGGTGAG
GGAGGACGTGATGCGCAAGTGCAAGAGCATGGGCAACCTGGCCGCCCTCGCCTCAGCCTG
TCCCTCCGGGGACGCTGGAGGCGCGGGCGACGGGTACCTCTCCGACGGCGGCCTTTTGCA
GTCGGCCGGCAAGCGGCGGAGGGCGCAGGAGAGGAAGAAAGCTGTCCCTTGGACTGAAGA
AGAGCATAGGACATTTCTTGCTGGTCTCGAAAAGCTGGGGAAGGGAGACTGGAGGGGTAT
AGCAAAAAATTTTGTTACTACCAGGACTCCAACTCAAGTGGCCAGCCATGCTCAGAAATA
TTTTCTCAGACAAACTAATCCAAACAAGAAGAAGCGCAGGTCTAGCCTTTTTGATATGAT
GGCAAGCGATTTGTCACCAGCACCAAATTGCCCCATCTTACCACCAACATGGCAAAATTT
CATGATATGGTAACTATGACTAATCAACTCCAGAACAACAGCTTGGAAAGAGTATCATCT
T



Homology of Contig U35_12923 to Model Species (E-value threshold 1e-50)

Pseudo-peptide datasetHitHit lengthE-valueDescription
Rice v7LOC_Os08g05510.22528e-77protein|MYB family transcription factor, putative, expressed
Brachypodium v1_2Bradi3g17170.22392e-85
Arabidopsis v10None