- Probe CUST_39831_PI390587928
- Source Contig U35_12926
Probe Details
| Probe ID | Chip | Probe Sequence (60 bp) | Probe location | Differentially Expressed |
|---|---|---|---|---|
| CUST_39831_PI390587928 | Hv_44K_v2 | TGGCAAGACTGCCGGAAATCTTTGCTGAGAGCTATACATTTGGCTCCATCAAATTATTTA | 543 | GeneList: turquoise MasterList: None |
Probe Values
| 3 dpa | 4 dpa | 5 dpa | 6 dpa | 7 dpa | 8 dpa | |
|---|---|---|---|---|---|---|
| Normalized | 1.447 | 1.260 | 1.512 | 1.043 | 0.579 | 0.434 |
| Raw | 45.404 | 59.641 | 64.473 | 66.000 | 13.169 | 11.414 |
Probe Sequence's BLAST hits in Barley Unigene Datasets
| Dataset | Hit | Hit Length | E-value | Position on Hit | % Identity | Match | Direction | Probes on Sequence |
|---|---|---|---|---|---|---|---|---|
| MLOC | AK248246.1 | 3577 | 2e-24 | 2359 - 2418 | 100 | 60 / 60 | plus | ABC29297 ABC49785 |
| MLOC | MLOC_45201.2 | 258 | 2e-24 | 91 - 150 | 100 | 60 / 60 | plus | None |
| MLOC | MLOC_45201.3 | 2424 | 2e-24 | 87 - 146 | 100 | 60 / 60 | plus | None |
| MLOC | MLOC_45201.1 | 2599 | 2e-24 | 120 - 179 | 100 | 60 / 60 | plus | None |
| JLOC1 | JLOC1_29341.3 | 2578 | 8e-25 | 89 - 148 | 100 | 60 / 60 | plus | |
| JLOC1 | JLOC1_29341.2 | 1687 | 8e-25 | 89 - 148 | 100 | 60 / 60 | plus | |
| JLOC1 | JLOC1_29341.1 | 455 | 8e-25 | 90 - 149 | 100 | 60 / 60 | plus | |
| Harvest21 | ABC24084 | 606 | 3e-25 | 544 - 603 | 100 | 60 / 60 | plus | |
| Harvest35 | U35_12926 | 606 | 3e-25 | 544 - 603 | 100 | 60 / 60 | plus |
Contig Sequence (606 bp)
>U35_12926 606 Hv_44K_v2 GTAAAGATAAATAGCAAGTATCCAAATGCACTGTCTATGCTTGGAAGTCTTGAACTCCAG AGTGATGAAACCTGGCTCACTGCGAAGGAACATTTCCGTGATGCTAAGGATGCTACTGAG GGAAAAGACCCATACTCTTGGCTTCAGCTGGGCAACTGGAACTATTTTGCTGCCAATCGC CCTGAGAAAAAGGCCCCAAAATTCGAGGCTACTCATCGGGAGAAAGCAAAGGAAATATTT TTGAATGTACTAAAGCAGAACCATGGTAATATGTTTGCTGCAAATGGTCTTGGAATCTTA CATGCTGAGAAAGCCCAATGGGATATTTCCAAGGAATTATTTACACAGGTACATGAAGCT GCATCAGGAAGTATATTTGTTCAGGTACCTGATGTATGGATCAATTTGGCCCATATATAT TTTGCTCAGGGCCTTTTTCAACAAGCAGTTAAAATGTACCAAAACTGTGCACGGAAGTTC TTCTACAACACAGATGCAACTACACTCCTATACCTTTCCCGAACACATTATGAAGCTGAG CAATGGCAAGACTGCCGGAAATCTTTGCTGAGAGCTATACATTTGGCTCCATCAAATTAT TTATTA
Homology of Contig U35_12926 to Model Species (E-value threshold 1e-50)
| Pseudo-peptide dataset | Hit | Hit length | E-value | Description |
|---|---|---|---|---|
| Rice v7 | LOC_Os07g29360.1 | 1070 | 5e-125 | protein|tetratricopeptide repeat domain containing protein, expressed |
| Brachypodium v1_2 | Bradi3g12240.1 | 1065 | 3e-130 | |
| Arabidopsis v10 | AT2G06210.1 | 1091 | 2e-91 | | Symbols: ELF8, VIP6 | binding | chr2:2429108-2436588 REVERSE LENGTH=1091 |