- Probe CUST_3982_PI390587928
- Source Contig U35_37353
Probe Details
| Probe ID | Chip | Probe Sequence (60 bp) | Probe location | Differentially Expressed |
|---|---|---|---|---|
| CUST_3982_PI390587928 | Hv_44K_v2 | ATTTTCGTTGGGTAGTGAAACACCGATGCACCCATCTAGAACGCCACTTCATCCATTTCA | 26 | GeneList: tan MasterList: None |
Probe Values
| 3 dpa | 4 dpa | 5 dpa | 6 dpa | 7 dpa | 8 dpa | |
|---|---|---|---|---|---|---|
| Normalized | 0.602 | 0.713 | 1.646 | 2.267 | 0.944 | 0.890 |
| Raw | 145.888 | 280.278 | 545.697 | 1198.799 | 177.385 | 180.189 |
Probe Sequence's BLAST hits in Barley Unigene Datasets
| Dataset | Hit | Hit Length | E-value | Position on Hit | % Identity | Match | Direction | Probes on Sequence |
|---|---|---|---|---|---|---|---|---|
| MLOC | MLOC_19368.6 | 3171 | 2e-24 | 2342 - 2401 | 100 | 60 / 60 | plus | ABC09818 |
| MLOC | MLOC_19368.5 | 3093 | 2e-24 | 2273 - 2332 | 100 | 60 / 60 | plus | ABC09818 |
| MLOC | MLOC_19368.7 | 3259 | 2e-24 | 2209 - 2268 | 100 | 60 / 60 | plus | ABC09818 |
| MLOC | MLOC_19368.4 | 3174 | 2e-24 | 2355 - 2414 | 100 | 60 / 60 | plus | ABC09818 |
| MLOC | MLOC_19368.2 | 3022 | 2e-24 | 2434 - 2493 | 100 | 60 / 60 | plus | ABC09818 |
| MLOC | MLOC_19368.3 | 3059 | 2e-24 | 2288 - 2347 | 100 | 60 / 60 | plus | ABC09818 |
| JLOC1 | JLOC1_13433.1 | 3390 | 8e-25 | 2259 - 2318 | 100 | 60 / 60 | plus | |
| Harvest21 | ABC09818 | 1391 | 1e-23 | 420 - 479 | 98 | 59 / 60 | plus | ABC09818 |
| Harvest35 | U35_37353 | 501 | 3e-25 | 27 - 86 | 100 | 60 / 60 | plus | |
| Harvest35 | U35_13729 | 2211 | 1e-23 | 1244 - 1303 | 98 | 59 / 60 | plus |
Contig Sequence (501 bp)
>U35_37353 501 Hv_44K_v2 GTTGCAACACCATTCCGTGAACCCCGATTTTCGTTGGGTAGTGAAACACCGATGCACCCA TCTAGAACGCCACTTCATCCATTTCAGACTCCAATGCGTGACCCTGGAGCAACACCGATT CATGATGGAATGCGAACCCCGATGCGTAGTAGGGCCTGGGCTCCTATGAGTCCTCCAAGA GATAATTGGGAAGATGGAAATCCTGATACTTGGGGAAGCAGTCCAGCTTACCAGCCAGGA ACACCACCAGCTCGGCAATGGCTATGCCCCAGTGCTGGACTGCCACACCTCCCACATTGC TGTCAAGTTTGCTGAGCTGGTGACCAAGATCGACAGGCGATCTGGTAAGGAGCTGGAGGC GCTGCCCAAGTTCCTCAAGAACGGTGATGCTGGTATCGTGAAAATGATTCCCACCAAGCC CATGGTTGTGGAGACCTTTGCCACCTACCCTCCTCTTGGCCGTTTTGCCGTGCGTGACAT GAGACAAACGGTTGCTGTCGG
Homology of Contig U35_37353 to Model Species (E-value threshold 1e-50)
| Pseudo-peptide dataset | Hit | Hit length | E-value | Description |
|---|---|---|---|---|
| Rice v7 | LOC_Os06g10620.1 | 760 | 5e-52 | protein|transcription elongation factor SPT5 homolog 1, putative, expressed |
| Brachypodium v1_2 | Bradi1g46230.2 | 994 | 3e-56 | |
| Arabidopsis v10 | None |