barSeed - Barley Seed Development Database

Probe CUST_39829_PI390587928

Source Contig U35_12928

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_39829_PI390587928	Hv_44K_v2	GGTCGCCAACGCGAGCCTGTACTGGGACCGGGCGGTCTCCGCGGCCAGGCGCAGGGGCGT	324	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	AK355559	1261	2e-24	373 - 432	100	60 / 60	plus	ABC26869
MLOC	AK359085	1406	2e-24	385 - 444	100	60 / 60	plus	ABC26869
MLOC	MLOC_72205.1	1040	2e-24	933 - 992	100	60 / 60	minus	ABC26869
JLOC1	JLOC1_48029.1	1369	8e-25	332 - 391	100	60 / 60	plus
Harvest21	ABC26583	395	3e-25	325 - 384	100	60 / 60	plus
Harvest35	U35_12928	384	3e-25	325 - 384	100	60 / 60	plus

Contig Sequence (384 bp)

>U35_12928 384 Hv_44K_v2
CAGCTCCAGAGCTCATCAACCGCCACCGAGCGCGCGCGAGATGCGGTCGTGGCAGCGCCG
CCTCTCGGCTGCCGGGGCCCTGGTCGCCGCCGTTCTGGCTCTGGGCGCCGCGGGGCCACG
CTCGCCGGCGCCGCTGCAGTTCTCGCCGGCTGGCCGGTTCAAGGTGGTGCTGTTCGCCGA
CCTGCATTACGGCGAGAACGCCTGGACGGACTGGGGCCCCGCGCAGGACGCCGCCTCCGA
CCACGTCATGGCCGCCGTGCTCGACGCCGAGAACCCAGACTTCGTGGTGTACCTGGGCGA
CCTCGTGACGGCGAACAACGTGCCGGTCGCCAACGCGAGCCTGTACTGGGACCGGGCGGT
CTCCGCGGCCAGGCGCAGGGGCGT

Homology of Contig U35_12928 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	None
Brachypodium v1_2	None
Arabidopsis v10	None