barSeed - Barley Seed Development Database

Probe CUST_39821_PI390587928

Source Contig U35_24907

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_39821_PI390587928	Hv_44K_v2	TAGATAAGGTAGTTTGCTGATTCTTGGGTCAAGCTAGCTAGCTAGAGACCATTGGGTCTG	188	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_60848.5	1714	2e-24	260 - 319	100	60 / 60	plus	ABC21171
MLOC	MLOC_60848.3	2133	2e-24	331 - 390	100	60 / 60	plus	None
MLOC	MLOC_60848.1	2272	2e-24	543 - 602	100	60 / 60	plus	ABC21171
MLOC	MLOC_60848.4	1845	2e-24	331 - 390	100	60 / 60	plus	None
MLOC	MLOC_60848.2	1392	2e-24	331 - 390	100	60 / 60	plus	None
JLOC1	JLOC1_39718.2	2154	8e-25	243 - 302	100	60 / 60	plus
JLOC1	JLOC1_39718.1	1879	8e-25	298 - 357	100	60 / 60	plus
Harvest21	ABC29290	423	3e-25	163 - 222	100	60 / 60	plus
Harvest35	U35_24907	473	3e-25	189 - 248	100	60 / 60	plus

Contig Sequence (473 bp)

>U35_24907 473 Hv_44K_v2
CCCCTCACTCATTCCTTCCTTCCTTCCTTCCTCATTTCCTCTCCTCTCCTCTCCTCTCCT
CTCCTGCACACACGCGTGCATACACTCCCGTCCCGCGGCACCTTGCAAGAATTGAACTGC
CTTGCCACCACAGCACGGCGAGAGGATACAAGCCACCTAGCCGGCGCCCGGCAAGCAGGC
AGCGCAGATAGATAAGGTAGTTTGCTGATTCTTGGGTCAAGCTAGCTAGCTAGAGACCAT
TGGGTCTGCCGATTCGTGCGACACGCCATGGCGCAGGAGGAGGTCCACGACGCCGGCCTG
GCGCTGGGCCTGTCCCTGGGAGGCGGGTCGTCGTCGGCACACCGCAGCAACAACAGCAGC
CGGCTGACCCTGTGGGAGGCGCCGTCGGCGGAGCCGTCGCTGACCCTCAGCATGCCGGAC
GACCCGACCATGACCGGCCGCACCGCGTCCGGCGGCGTGTCGTCCATGTCGGT

Homology of Contig U35_24907 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	None
Brachypodium v1_2	None
Arabidopsis v10	None