barSeed - Barley Seed Development Database

Probe CUST_39820_PI390587928

Source Contig U35_24908

barSeed

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_39820_PI390587928	Hv_44K_v2	GATATATGGAGCAATACTTCTAATGTAAGCACCATGCGCATGGTGCCCCCAACAAACACA	606	GeneList: purple MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	0.146	0.386	0.748	2.169	1.335	1.824
Raw	5.414	27.643	45.305	211.420	44.095	66.268

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_52430.1	745	2e-24	460 - 519	100	60 / 60	plus	ABC20777
Harvest21	ABC20777	1081	3e-25	607 - 666	100	60 / 60	plus	ABC20777
Harvest35	U35_24908	694	3e-25	607 - 666	100	60 / 60	plus

Contig Sequence (694 bp)

>U35_24908 694 Hv_44K_v2
GCACCCACACACACACCAGCGGATCAAGATCCACCCAAGCGGAGATAGGGCAAGCAAGGA
CTGCTTCTTTAGATGTGAATTCATTACAGGAACCAGAATCTTGGAATGGTGGCTGATGCG
GAGAGCTCAGATTCAATGGCTGGCAGCTCAAGGTCTGCTGCCGAAAAGCACGTTGACAGG
TGTCTTGACAAAAGAGCCCAGGAAAAGGCTCCAAAGAAAAATCATAAAGCTGAGCGAGAG
AAACTTAAGCGTGATCAGTTGAATGACCTTTTTGTTGAGCTCAGCAGTATGCTAGATCAT
GATCGACAAAATAGTGGAAAAGCTACAGTATTGGGTGATGCTGCGCGAGTACTACGAGAT
TTAATTACTCAAGTTGAATCTCTTAGAAAGGAGCAATCTACCCTTCTAACTGAGTGCCAA
TATGTCGGTTCAGAGAAGACCGAGCTGCAAGATGAGAATACTACACTCAAAGCCCAGATA
ATAGAACTGCAGAACGAGCTTGGTGCAAGGATCAGAAAAAATAACCTGAATTTAAGCAGC
CTTGGGGTGTCACATCCAATAGGGAGCAGCTGCACTGCTAATTTAGCAACTCACCCAACG
CGGCATGATATATGGAGCAATACTTCTAATGTAAGCACCATGCGCATGGTGCCCCCAACA
AACACACTACCTCCAGTGCAGAATCAGCAGCATC

Homology of Contig U35_24908 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os11g38870.1	279	5e-77	protein\|helix-loop-helix DNA-binding domain containing protein, expressed
Brachypodium v1_2	Bradi4g14190.3	273	2e-84
Arabidopsis v10	None