barSeed - Barley Seed Development Database

Probe CUST_39815_PI390587928

Source Contig U35_12935

barSeed

Links

Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_39815_PI390587928	Hv_44K_v2	TTCAGGAAAGCATACGCAAGCAGATTGCCCGGGAGTTGAAAATAAGTCTGTCAACACAGT	486	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_66088.6	3059	2e-24	2964 - 3023	100	60 / 60	minus	ABC00014 ABC00075 ABC00082 ABC00094 ABC00105 ABC00106 ABC00124 ABC00130 ABC00135 ABC00141 ABC00176 ABC00186 ABC00196 ABC00201 ABC00204 ABC00338 ABC00349 ABC00484 ABC00570 ABC00657 ABC00660 ABC00669 ABC00672 ABC00684 ABC00701 ABC00787 ABC00971 ABC31599 ABC32138
MLOC	MLOC_66088.7	3063	2e-24	2968 - 3027	100	60 / 60	minus	ABC00014 ABC00075 ABC00082 ABC00094 ABC00105 ABC00106 ABC00124 ABC00130 ABC00135 ABC00141 ABC00176 ABC00186 ABC00196 ABC00201 ABC00204 ABC00338 ABC00349 ABC00484 ABC00570 ABC00657 ABC00660 ABC00669 ABC00672 ABC00684 ABC00701 ABC00787 ABC00971 ABC31599 ABC32138
MLOC	MLOC_66088.8	2627	2e-24	2463 - 2522	100	60 / 60	minus	ABC00014 ABC00075 ABC00082 ABC00094 ABC00105 ABC00106 ABC00124 ABC00130 ABC00135 ABC00141 ABC00176 ABC00186 ABC00196 ABC00201 ABC00204 ABC00338 ABC00349 ABC00484 ABC00570 ABC00657 ABC00660 ABC00669 ABC00672 ABC00684 ABC00701 ABC00787 ABC00971 ABC31599 ABC32138
MLOC	MLOC_66088.9	3043	2e-24	2879 - 2938	100	60 / 60	minus	ABC00014 ABC00075 ABC00082 ABC00094 ABC00105 ABC00106 ABC00124 ABC00130 ABC00135 ABC00141 ABC00176 ABC00186 ABC00196 ABC00201 ABC00204 ABC00338 ABC00349 ABC00484 ABC00570 ABC00657 ABC00660 ABC00669 ABC00672 ABC00684 ABC00701 ABC00787 ABC00971 ABC31599 ABC32138
MLOC	MLOC_66088.10	2079	2e-24	1915 - 1974	100	60 / 60	minus	ABC00014 ABC00075 ABC00082 ABC00094 ABC00105 ABC00106 ABC00124 ABC00130 ABC00135 ABC00141 ABC00176 ABC00186 ABC00196 ABC00201 ABC00204 ABC00338 ABC00349 ABC00484 ABC00570 ABC00657 ABC00660 ABC00669 ABC00672 ABC00684 ABC00701 ABC00787 ABC00971 ABC31599 ABC32138
MLOC	MLOC_66088.12	2986	2e-24	2831 - 2890	100	60 / 60	minus	ABC00014 ABC00075 ABC00082 ABC00094 ABC00105 ABC00106 ABC00124 ABC00130 ABC00135 ABC00141 ABC00176 ABC00186 ABC00196 ABC00201 ABC00204 ABC00338 ABC00349 ABC00484 ABC00570 ABC00657 ABC00660 ABC00669 ABC00672 ABC00684 ABC00701 ABC00787 ABC00971 ABC31599 ABC32138
MLOC	MLOC_66088.13	3047	2e-24	2892 - 2951	100	60 / 60	minus	ABC00014 ABC00075 ABC00082 ABC00094 ABC00105 ABC00106 ABC00124 ABC00130 ABC00135 ABC00141 ABC00176 ABC00186 ABC00196 ABC00201 ABC00204 ABC00338 ABC00349 ABC00484 ABC00570 ABC00657 ABC00660 ABC00669 ABC00672 ABC00684 ABC00701 ABC00787 ABC00971 ABC31599 ABC32138
MLOC	MLOC_66088.14	2588	2e-24	2433 - 2492	100	60 / 60	minus	ABC00014 ABC00075 ABC00082 ABC00094 ABC00105 ABC00106 ABC00124 ABC00130 ABC00135 ABC00141 ABC00176 ABC00186 ABC00196 ABC00201 ABC00204 ABC00338 ABC00349 ABC00484 ABC00570 ABC00657 ABC00660 ABC00669 ABC00672 ABC00684 ABC00701 ABC00787 ABC00971 ABC31599 ABC32138
MLOC	MLOC_66088.17	840	2e-24	679 - 738	100	60 / 60	minus	None
MLOC	MLOC_66088.1	3195	2e-24	3034 - 3093	100	60 / 60	minus	ABC00014 ABC00075 ABC00082 ABC00094 ABC00105 ABC00106 ABC00124 ABC00130 ABC00135 ABC00141 ABC00176 ABC00186 ABC00196 ABC00201 ABC00204 ABC00338 ABC00349 ABC00484 ABC00570 ABC00657 ABC00660 ABC00669 ABC00672 ABC00684 ABC00701 ABC00787 ABC00971 ABC31599 ABC32138
MLOC	MLOC_66088.2	2465	2e-24	2304 - 2363	100	60 / 60	minus	ABC00014 ABC00075 ABC00082 ABC00094 ABC00105 ABC00106 ABC00124 ABC00130 ABC00135 ABC00141 ABC00176 ABC00186 ABC00196 ABC00201 ABC00204 ABC00338 ABC00349 ABC00484 ABC00570 ABC00657 ABC00660 ABC00669 ABC00672 ABC00684 ABC00701 ABC00787 ABC00971 ABC31599 ABC32138
MLOC	MLOC_66088.4	2857	2e-24	2696 - 2755	100	60 / 60	minus	ABC00014 ABC00075 ABC00082 ABC00094 ABC00105 ABC00106 ABC00124 ABC00130 ABC00135 ABC00141 ABC00176 ABC00186 ABC00196 ABC00201 ABC00204 ABC00338 ABC00349 ABC00484 ABC00570 ABC00657 ABC00660 ABC00669 ABC00672 ABC00684 ABC00701 ABC00787 ABC00971 ABC31599 ABC32138
MLOC	MLOC_66088.5	3311	2e-24	3150 - 3209	100	60 / 60	minus	ABC00014 ABC00075 ABC00082 ABC00094 ABC00105 ABC00106 ABC00124 ABC00130 ABC00135 ABC00141 ABC00176 ABC00186 ABC00196 ABC00201 ABC00204 ABC00338 ABC00349 ABC00484 ABC00570 ABC00657 ABC00660 ABC00669 ABC00672 ABC00684 ABC00701 ABC00787 ABC00971 ABC31599 ABC32138
MLOC	MLOC_66088.16	1102	2e-24	948 - 1007	100	60 / 60	minus	None
MLOC	MLOC_66088.15	2037	2e-24	1883 - 1942	100	60 / 60	minus	None
MLOC	MLOC_66088.3	2868	2e-24	2707 - 2766	100	60 / 60	minus	ABC00014 ABC00075 ABC00082 ABC00094 ABC00105 ABC00106 ABC00124 ABC00130 ABC00135 ABC00141 ABC00176 ABC00186 ABC00196 ABC00201 ABC00204 ABC00338 ABC00349 ABC00484 ABC00570 ABC00657 ABC00660 ABC00669 ABC00672 ABC00684 ABC00701 ABC00787 ABC00971 ABC31599 ABC32138
JLOC1	JLOC1_43539.17	3609	8e-25	501 - 560	100	60 / 60	plus
JLOC1	JLOC1_43539.16	3257	8e-25	501 - 560	100	60 / 60	plus
JLOC1	JLOC1_43539.15	3345	8e-25	463 - 522	100	60 / 60	plus
JLOC1	JLOC1_43539.14	3429	8e-25	341 - 400	100	60 / 60	plus
JLOC1	JLOC1_43539.13	3442	8e-25	273 - 332	100	60 / 60	plus
JLOC1	JLOC1_43539.12	2814	8e-25	217 - 276	100	60 / 60	plus
JLOC1	JLOC1_43539.11	2687	8e-25	169 - 228	100	60 / 60	plus
JLOC1	JLOC1_43539.10	2220	8e-25	169 - 228	100	60 / 60	plus
JLOC1	JLOC1_43539.9	2892	8e-25	169 - 228	100	60 / 60	plus
JLOC1	JLOC1_43539.8	2627	8e-25	148 - 207	100	60 / 60	plus
JLOC1	JLOC1_43539.7	2517	8e-25	141 - 200	100	60 / 60	plus
JLOC1	JLOC1_43539.6	2134	8e-25	128 - 187	100	60 / 60	plus
JLOC1	JLOC1_43539.5	2172	8e-25	120 - 179	100	60 / 60	plus
JLOC1	JLOC1_43539.4	3055	8e-25	120 - 179	100	60 / 60	plus
JLOC1	JLOC1_43539.3	2181	8e-25	112 - 171	100	60 / 60	plus
JLOC1	JLOC1_43539.2	2552	8e-25	341 - 400	100	60 / 60	plus
JLOC1	JLOC1_43539.1	3064	8e-25	341 - 400	100	60 / 60	plus
Harvest21	ABC25047	555	3e-25	487 - 546	100	60 / 60	plus
Harvest35	U35_12935	546	3e-25	487 - 546	100	60 / 60	plus

Contig Sequence (546 bp)

>U35_12935 546 Hv_44K_v2
ATGGCGCGGCCGGGAAAGGCGGGCGATTCTGCCGGAGGTGGTGCGCCCGCGGGAGGTCGC
CCTCCACCCCGGCGTCATCGTCTTCTCTCAGTCTCTACTTTAAAAAGCAGGGCAAAGATG
AGACGGACAAAGACTCATCCATCCACTCACCCTGGCGAGGGAGCCCTACACTGCCGCCGC
TATTGAAAAAGCCGGGCAAGATCGCTCTCCCCTCCCACGAGTCCACCATGGGAAAATTCC
TGACGCAGATCGGGGCGTTCAAGGACGGCGACGACCACCTCCTCGTCAACAAGGACGGCC
TCCGCATCATCCCGCAGATCGAGGAAGGCGAGGCTCCTCCTATAAAGTCGTTAGATAACC
ATCAGTTGAGCATAAATGATTTGGAAGCAATCAAGGTGATCGGGAAAGGTAGTAGTGGAA
CCGTGCAATTGGTGCGCCAGAAATGGACTGGCCAGTTTTTTGCTCTCAAGGTTATACAAC
TCAATATTCAGGAAAGCATACGCAAGCAGATTGCCCGGGAGTTGAAAATAAGTCTGTCAA
CACAGT

Homology of Contig U35_12935 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os06g05520.1	353	4e-53	protein\|OsMKK1 - putative MAPKK based on amino acid sequence homology, expressed
Brachypodium v1_2	Bradi1g51000.2	314	2e-53
Arabidopsis v10	None