barSeed - Barley Seed Development Database

Probe CUST_39804_PI390587928

Source Contig U35_12941

barSeed

Links

Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_39804_PI390587928	Hv_44K_v2	TATTCCAGTGTTGGTCGGATGTTTGTTTGTCAAAAGTGATTGATCTATGTTGTGTGACAT	488	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	AK360509	1758	7e-23	1692 - 1748	100	57 / 57	plus	ABC11446
MLOC	MLOC_69206.3	2088	7e-23	1784 - 1840	100	57 / 57	plus	ABC11446
MLOC	MLOC_69206.1	1798	7e-23	1494 - 1550	100	57 / 57	plus	ABC11446
Harvest35	U35_12941	575	3e-25	489 - 548	100	60 / 60	plus

Contig Sequence (575 bp)

>U35_12941 575 Hv_44K_v2
CCTAAAGGCCCTCCATCCTATGGCGGTCCTCCAGGTGATTACGCACCGCCCCCAAGTTCC
TATGGAGGCAACAATGTGTACAGTTCAGAGTCTGCAGTGCCACCCCCTAACAGCTATGGC
AGCGGTCGAGGCTCTTACCCACCAAGCTATGGTGCCCCACCTCCGAACCCATATAGTGGC
GGTGCCCCAGGGGGGCAAGGAGGCCTGCCACCTACATATGATGGTGGTTATGGTGCTCGG
TCTGTGCCTGGGGGTGGAGGCGCAGGTGGTGCTCCACCACCTTATCAAGGTGGTGGCGGC
GGTTATTCTGCAAATGCTGCCCCTGAACCTACTACAAAGGTTAAGCAGTGTGATGCAAAC
AGTCATATAATTACTAAGATTGTCATCTGCAAGAAACCATTTATATTCATGTTCTCTCTG
GACTTGTACTCATACAGGAGAGCGTAAGGTAGGTTGTCTGCTTTCCCTGGACTTCTGTTC
CATTGTCTTATTCCAGTGTTGGTCGGATGTTTGTTTGTCAAAAGTGATTGATCTATGTTG
TGTGACATAAAAAAAAAGAAAAAAAAAAAAAAAAA

Homology of Contig U35_12941 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	None
Brachypodium v1_2	None
Arabidopsis v10	None