barSeed - Barley Seed Development Database

Probe CUST_39803_PI390587928

Source Contig U35_12942

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_39803_PI390587928	Hv_44K_v2	CAGTCCGAGATGCTGCTGCACACCATGCTGGAGGCAGGCATCATGCCGGACAACGCGTCC	600	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_15169.1	2955	2e-24	2449 - 2508	100	60 / 60	minus	ABC13447
JLOC1	JLOC1_10388.2	2875	8e-25	452 - 511	100	60 / 60	plus
JLOC1	JLOC1_10388.1	2873	8e-25	447 - 506	100	60 / 60	plus
Harvest35	U35_12942	660	3e-25	601 - 660	100	60 / 60	plus

Contig Sequence (660 bp)

>U35_12942 660 Hv_44K_v2
GGGTACTCGTACGAGGTGGACTCGCTGATCGACAGGCTGAGCAACCTGGCGCCGCGGGGG
TCCATCGCGCGGTGCCTCGAGACGGCCAAGCACCGGCTCACGCTGCAGGACTTCGCGGCG
GTGTACCGCGAGTTCTCCCGCCGCGGCGACTGGCAGCGCTCCATGCGCCTCTTCAAGTAC
ATGCAGCGCCAGTCCTGGTGCCGCCCCGACGAGCACATCCACGCCATCGTCATCGGCGTG
CTCGGCCGCCAGGGCCCCGCCCTCCTCGACAAGTGCCTCGAGGTCTTCCAGGACCTCCCC
GCCGACGCCCGCACCGCGCTCTCCTACACCTCCCTCATCGCCGCCTACGCCCGCAACGCG
CTCCACGACGACGCCCGCGCCCTGCTCGACCAGATGAAGGCCCACGGGGTCGCCCCCACC
GCCGCCACCTACAACACCGTGCTCGCCGCCTGCGCCCGCGCCGCCGACCCGCCCGTCCCC
TTCGACATGCTCCTCGGCCTCTTCGCCGAGATGCGCCACGACCCCTCCCCGGCCGTGCGC
CCCGACCTCACCACCTACAACACGCTCCTCGCCGNCGCGGCAGTGCGCTCCCTCAGCGAC
CAGTCCGAGATGCTGCTGCACACCATGCTGGAGGCAGGCATCATGCCGGACAACGCGTCC

Homology of Contig U35_12942 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os03g60910.1	869	2e-126	protein\|PPR repeat domain containing protein, putative, expressed
Brachypodium v1_2	Bradi1g03450.1	863	2e-127
Arabidopsis v10	AT1G74850.1	862	6e-69	\| Symbols: PTAC2 \| plastid transcriptionally active 2 \| chr1:28119237-28122314 REVERSE LENGTH=862