barSeed - Barley Seed Development Database

Probe CUST_39800_PI390587928

Source Contig U35_12946

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_39800_PI390587928	Hv_44K_v2	AATATCTTGAGCATGATACTTCCTCGACCAGGCAAGAATCTGATAACTACTCCAGTACAG	506	GeneList: brown4 MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	1.693	1.073	1.314	0.636	0.376	0.356
Raw	36.734	32.564	37.960	24.971	5.218	5.631

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_29459.4	3910	2e-24	822 - 881	100	60 / 60	plus	ABC41267
MLOC	MLOC_29459.1	3937	2e-24	3206 - 3265	100	60 / 60	minus	ABC41267
MLOC	MLOC_29459.2	3864	2e-24	3133 - 3192	100	60 / 60	minus	ABC41267
MLOC	MLOC_29459.3	3667	2e-24	2935 - 2994	100	60 / 60	minus	ABC41267
MLOC	MLOC_29459.5	3520	2e-24	2784 - 2843	100	60 / 60	minus	None
JLOC1	JLOC1_19614.3	3797	8e-25	674 - 733	100	60 / 60	plus
JLOC1	JLOC1_19614.2	3775	8e-25	674 - 733	100	60 / 60	plus
JLOC1	JLOC1_19614.1	3808	8e-25	674 - 733	100	60 / 60	plus
Harvest21	ABC23765	588	3e-25	507 - 566	100	60 / 60	plus
Harvest35	U35_12946	589	3e-25	507 - 566	100	60 / 60	plus

Contig Sequence (589 bp)

>U35_12946 589 Hv_44K_v2
CAGTCACAACCTGCAGGATTTTTGCGTGTGTCGTGTGTCAAGGGATGTCTGCCTCAGAAA
ACCAGGCTGCTGATATCAGCAACGAAACTGATGATACGAAAGCAGACCGTCCGTGGAACA
TCATACGTATACGTTTACCACCCAGGAAGAAGTTACCTGATGCCTCCCTCACCCTGAGCA
AGAAAGTACCTAGGATTAACAAAACCAGGGGTAATGAAGTACCTGAAATGAGTACTGACA
GCCCAGGCAAGAATCTGATAACTGCTCCAGTACAGGGTGATGCAAGCAGCCACTCCCCAA
CAATGGGACTGTGTAATGAGGGCGGTAGCAATACCCTGAGCAAGACACTGTCTGCTGAAC
CTGAGAGCGACACCTCAGGCCACAAACAACCAGATGAGGCAACTTTCAGCACCCTGAGCA
AGAACCTAAGAGTTGATGATGAAGAGCAAGGAAGTGATGCAAACTGTGATGCTGCTAAAC
AAGGACCGTATGAAGAGGCCAACAACAATATCTTGAGCATGATACTTCCTCGACCAGGCA
AGAATCTGATAACTACTCCAGTACAGGGTGAGGCAAGCAGCCACTCCCC

Homology of Contig U35_12946 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	None
Brachypodium v1_2	None
Arabidopsis v10	None