barSeed - Barley Seed Development Database

Probe CUST_39798_PI390587928

Source Contig U35_12948

barSeed

Links

Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_39798_PI390587928	Hv_44K_v2	CGGCCTACCCCACGGTACCGGCGATCAGACGGCGTTCCTAATGGGCGGCGGCAGCAGCAA	406	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	AK366536	2695	2e-24	2187 - 2246	100	60 / 60	plus	ABC43162
MLOC	AK354639	2996	2e-24	2603 - 2662	100	60 / 60	plus	ABC43162
MLOC	MLOC_68213.1	588	2e-24	353 - 412	100	60 / 60	minus	ABC43162
MLOC	MLOC_68213.2	2560	2e-24	352 - 411	100	60 / 60	minus	ABC43162
JLOC1	JLOC1_45111.1	2917	8e-25	2150 - 2209	100	60 / 60	plus
Harvest21	ABC21906	465	1e-24	407 - 465	100	59 / 59	plus
Harvest35	U35_12948	466	3e-25	407 - 466	100	60 / 60	plus

Contig Sequence (466 bp)

>U35_12948 466 Hv_44K_v2
CCATGCTCGGGCTCGCCGGAGACCACCAGGCTCACGCGGGTTTCTACCACGACGAGGATG
AGGATGGCGGGTTGCGGCGCGGGTTCAAGAAGGCAAGGGCGGACGACCTCGAGCACCAAC
CGCCGGCGGCGTTCGACTTCGGCGCGTTGCACCACGCGCAGGCAGCCGCGGCGGCGGCGG
CCGCAGCCGCAAGGCAGCAGCACGACGAGGTGAGCCACCGGGAGCTGCTCATGAAGTTCA
TGGAGAGCGGCGGCACGGCGGGCGCTAGGGACCACCACCAGCACCAACAAGACGACGACG
GGGCCGGCGGCGGCTACTCTCTGTTCGCGCCGGGGCCGTACGGGCAGTTCGGCACCGACC
AGTCGTTCGCGTTCGCCGGGCAGCACGGCGGCGTCTCGCTCACGCTCGGCCTACCCCACG
GTACCGGCGATCAGACGGCGTTCCTAATGGGCGGCGGCAGCAGCAA

Homology of Contig U35_12948 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	None
Brachypodium v1_2	None
Arabidopsis v10	None