- Probe CUST_39782_PI390587928
- Source Contig U35_36907
Probe Details
| Probe ID | Chip | Probe Sequence (60 bp) | Probe location | Differentially Expressed |
|---|---|---|---|---|
| CUST_39782_PI390587928 | Hv_44K_v2 | CCATCAAGCTCCAGATTTGGGACACGGCTGGCCAAGAATCATTCAGATCTATAACAAGAT | 387 | GeneList: lightyellow MasterList: None |
Probe Values
| 3 dpa | 4 dpa | 5 dpa | 6 dpa | 7 dpa | 8 dpa | |
|---|---|---|---|---|---|---|
| Normalized | 0.297 | 0.407 | 1.079 | 1.829 | 1.150 | 1.342 |
| Raw | 373.772 | 748.139 | 1849.503 | 5036.087 | 1088.031 | 1395.271 |
Probe Sequence's BLAST hits in Barley Unigene Datasets
| Dataset | Hit | Hit Length | E-value | Position on Hit | % Identity | Match | Direction | Probes on Sequence |
|---|---|---|---|---|---|---|---|---|
| MLOC | MLOC_54966.1 | 1939 | 2e-24 | 1455 - 1514 | 100 | 60 / 60 | minus | ABC04704 ABC04705 ABC04706 |
| JLOC1 | JLOC1_35423.1 | 2049 | 8e-25 | 487 - 546 | 100 | 60 / 60 | plus | |
| Harvest21 | ABC32381 | 447 | 3e-25 | 388 - 447 | 100 | 60 / 60 | plus | |
| Harvest21 | ABC04706 | 1042 | 3e-25 | 283 - 342 | 100 | 60 / 60 | plus | ABC04706 |
| Harvest35 | U35_36907 | 447 | 3e-25 | 388 - 447 | 100 | 60 / 60 | plus | |
| Harvest35 | U35_1645 | 1067 | 3e-25 | 283 - 342 | 100 | 60 / 60 | plus |
Contig Sequence (447 bp)
>U35_36907 447 Hv_44K_v2 GGGCACGCGCATCGTGGGCTGGCTCTGGTCGTTTTGGTCGGCCTCCGTGCACGTCGCCAA CATAAATTAGCTGTCGCGTGCGTCGGTTCTGTCTCGTTGCTTTGCCCCTCCTTCTCTTCC ACGGTGCACAAGCGCCCGCAATTCCCCTTCCCCTTCCCCTTCCCCTTCCCTCTTAAACCA ATCAGACGCTAGAATCTCCGATCCATTCGCCGCCGCCGGGATCGACCATGTCGTACGCCT ACCTCTTCAAGTACATCATCATCGGCGACACAGGCGTAGGCAAGTCATGCCTGCTGCTGC AGTTCACCGACAAGAGGTTTCAGCCCGTGCACGACCTCACCATCGGTGTCGAGTTCGGCG CCCGCATGATCACCATCGACAACAAGCCCATCAAGCTCCAGATTTGGGACACGGCTGGCC AAGAATCATTCAGATCTATAACAAGAT
Homology of Contig U35_36907 to Model Species (E-value threshold 1e-50)
| Pseudo-peptide dataset | Hit | Hit length | E-value | Description |
|---|---|---|---|---|
| Rice v7 | None | |||
| Brachypodium v1_2 | None | |||
| Arabidopsis v10 | None |