barSeed - Barley Seed Development Database

Probe CUST_39780_PI390587928

Source Contig U35_36909

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_39780_PI390587928	Hv_44K_v2	TCACACTCTCATTACTCCCAAGGAGTCAATGGCAAAGCTTGACAAATCTTGACATTATAA	275	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	AK363137	3081	2e-24	1997 - 2056	100	60 / 60	plus	ABC24129
MLOC	MLOC_5664.1	3200	7e-23	831 - 890	98	59 / 60	minus	ABC24129
MLOC	MLOC_5664.2	3036	7e-23	826 - 885	98	59 / 60	minus	ABC24129
JLOC1	JLOC1_3658.2	3419	4e-23	2326 - 2385	98	59 / 60	plus
JLOC1	JLOC1_3658.1	3046	4e-23	1953 - 2012	98	59 / 60	plus
Harvest21	ABC32384	338	3e-25	276 - 335	100	60 / 60	plus
Harvest35	U35_36909	338	3e-25	276 - 335	100	60 / 60	plus

Contig Sequence (338 bp)

>U35_36909 338 Hv_44K_v2
GATAACATCCGTCTCTATGTCTCCTAATATGGATGTGCTGGCAACCACCCATGTTGATCA
AAATGGCGTGTATCTTTGGGTTAATCAAGCTTTGTTCTCGCCCTCGACAAATGTTGACAG
CTATGCAAGTGGTAAACATGTCCGGAATGTGCTTTTGCCAACTGTTTCATCAGCCGAAAG
ATCTGAGGAGGAAGAACCCATTAAAAAATCACACGATTCAAATGAATCCAATATTAAACC
TTTTGTCATAATGGATCATCAAATACCAAATATGATCACACTCTCATTACTCCCAAGGAG
TCAATGGCAAAGCTTGACAAATCTTGACATTATAAAGG

Homology of Contig U35_36909 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os06g43690.1	904	8e-58	protein\|WD repeat-containing protein, putative, expressed
Brachypodium v1_2	Bradi1g30580.1	905	1e-61
Arabidopsis v10	None