barSeed - Barley Seed Development Database

Probe CUST_39779_PI390587928

Source Contig U35_12950

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_39779_PI390587928	Hv_44K_v2	TTCTATTTACTTACGAGACCTGAATATTCTGGATCAGCACCAACAAGAGAACCACCCCCT	607	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	AK368262	4898	2e-24	869 - 928	100	60 / 60	plus	ABC11348 ABC32895
MLOC	MLOC_46684.1	1782	2e-24	967 - 1026	100	60 / 60	minus	None
MLOC	MLOC_46684.2	1744	2e-24	967 - 1026	100	60 / 60	minus	None
MLOC	MLOC_46684.3	1733	2e-24	967 - 1026	100	60 / 60	minus	None
JLOC1	JLOC1_30203.3	2037	8e-25	677 - 736	100	60 / 60	plus
JLOC1	JLOC1_30203.2	2097	8e-25	678 - 737	100	60 / 60	plus
JLOC1	JLOC1_30203.1	2079	8e-25	678 - 737	100	60 / 60	plus
Harvest21	ABC41381	691	3e-25	608 - 667	100	60 / 60	plus
Harvest35	U35_12950	691	3e-25	608 - 667	100	60 / 60	plus

Contig Sequence (691 bp)

>U35_12950 691 Hv_44K_v2
TCTGGCCTCTCCTTCGTCCTCTTCTCTCACGGTTGATGGCCTGAACTCTGAACTCCACTG
CTGCCTTTTCCCGATAACCCCAGCAGCGTCCCTTCCGGATCTTTGCCGCCGCATCCCACC
CGCATCTGGATCTCTCCACCGCTGCCACTCCTCGGCCCTCGCCTTGCCCTCCTTCATATC
CCCACCTCTCGCCATCTCAGCAACCCCTCTCTTCGCCTGGATCTCCACCGCCGGCGAGCT
CCTTCCCTCACCCACCGAAGCCTCTCGGTTCATTGCGCCGGTGGCAGTTGGTAGTCCATC
CTCAGATTTTTTTTTTGTTTCCCTTGCACAAAATATGGACGAAGAAAATCCTGTTGAGCT
GCTACAACGTTATCGCCGTGATCGCCATGTGTTACTCAATTACATCCTTTCCGGTAACTT
GATCAAGAAAGTTGTAATGCCGCCTGGTGCTATCTCTCTGGATGATGTGGATATCGATCA
AGTCAGTGTTGATTATGTCCTCAATTGTGCTAAGAAAGGGGATCCTCTTGACCTTGGAGA
TGCCATCCGGCTTTATCATGACAGCCTTGATTACCCATATGTTGATAACACAGGAGATGT
CGAAGGGTTCTATTTACTTACGAGACCTGAATATTCTGGATCAGCACCAACAAGAGAACC
ACCCCCTATCCCTGCCACTGCACCACCACGA

Homology of Contig U35_12950 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os03g47930.1	1109	8e-54	protein\|expressed protein
Brachypodium v1_2	Bradi1g20630.1	1110	1e-54
Arabidopsis v10	None