- Probe CUST_39774_PI390587928
- Source Contig U35_12955
Probe Details
| Probe ID | Chip | Probe Sequence (60 bp) | Probe location | Differentially Expressed |
|---|---|---|---|---|
| CUST_39774_PI390587928 | Hv_44K_v2 | CATCAAGATGTCATCCACCTCCCCCTGATTACTATTACAGTAGTATTTTTCTTTTTTGCC | 374 | GeneList: salmon MasterList: None |
Probe Values
| 3 dpa | 4 dpa | 5 dpa | 6 dpa | 7 dpa | 8 dpa | |
|---|---|---|---|---|---|---|
| Normalized | 4.173 | 3.548 | 1.428 | 0.450 | 0.106 | 0.037 |
| Raw | 2289.363 | 3117.147 | 1075.163 | 535.813 | 45.952 | 17.365 |
Probe Sequence's BLAST hits in Barley Unigene Datasets
| Dataset | Hit | Hit Length | E-value | Position on Hit | % Identity | Match | Direction | Probes on Sequence |
|---|---|---|---|---|---|---|---|---|
| MLOC | MLOC_22671.1 | 519 | 2e-24 | 110 - 169 | 100 | 60 / 60 | minus | ABC29584 |
| JLOC1 | JLOC1_15710.1 | 492 | 8e-25 | 98 - 157 | 100 | 60 / 60 | minus | |
| Harvest21 | ABC29584 | 447 | 3e-25 | 331 - 390 | 100 | 60 / 60 | plus | ABC29584 |
| Harvest35 | U35_12955 | 491 | 3e-25 | 375 - 434 | 100 | 60 / 60 | plus |
Contig Sequence (491 bp)
>U35_12955 491 Hv_44K_v2 CACTCCTATAGGGCGAATTGGGCCCTTTCCAAGATGCTCGAGCGGCCGCTCATCAATCTA GATAGTCTGTCCACTATATTGTGAATGACAATGTCAAAAGTTGTGGCCGTAGTGATAGTT CTTAGTTTGATGATGATCATCACGGTCGTGCACAAGGAGCGAGCACTGACAGCTGTTCCA ATAGAAGAAACCAGTGAAGGATGGGTGCGCTATTCGGTGACTACATCGCCGACAACCAAC GAAGCTAATAAATCATGTGGTGGTCAGGAGCCCCCACCAAAATGTCATCATCCACCTTCC CCTGTTTACTAGTACAGTAGTATTTTTCTTTTTTGCCTTATTGTGCTGAATAAAACATTG TGGTCAGGAGCCCCCATCAAGATGTCATCCACCTCCCCCTGATTACTATTACAGTAGTAT TTTTCTTTTTTGCCTTATTGTGCTGAATAAAACATCGTACAAGATATTTTTCCTAAAAAA AAAAAAAAAAA
Homology of Contig U35_12955 to Model Species (E-value threshold 1e-50)
| Pseudo-peptide dataset | Hit | Hit length | E-value | Description |
|---|---|---|---|---|
| Rice v7 | None | |||
| Brachypodium v1_2 | None | |||
| Arabidopsis v10 | None |