barSeed - Barley Seed Development Database

Probe CUST_39772_PI390587928

Source Contig U35_12957

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_39772_PI390587928	Hv_44K_v2	GGATTGTCTGTCGGTTCATCAACCTATGACTTATTGAATGGTTGATTTGAGCCATATCCC	423	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_66417.1	3682	2e-24	2819 - 2878	100	60 / 60	minus	ABC36421
MLOC	MLOC_66417.2	3685	2e-24	2822 - 2881	100	60 / 60	minus	ABC36421
JLOC1	JLOC1_43764.4	2699	8e-25	1828 - 1887	100	60 / 60	minus
JLOC1	JLOC1_43764.3	3122	8e-25	2251 - 2310	100	60 / 60	minus
JLOC1	JLOC1_43764.2	3690	8e-25	2819 - 2878	100	60 / 60	minus
JLOC1	JLOC1_43764.1	3694	8e-25	2823 - 2882	100	60 / 60	minus
Harvest21	ABC36421	485	3e-25	404 - 463	100	60 / 60	plus	ABC36421
Harvest35	U35_12957	505	3e-25	424 - 483	100	60 / 60	plus

Contig Sequence (505 bp)

>U35_12957 505 Hv_44K_v2
GGGGAGCACTAGCCATAGATACACATAGCTGCTGAGAGAGGGGAGCGGAGCTCGCGCTCG
CCGTCGACCGGACGAACATGCCGGGCGACTGGGGCCCGGTGCTGATCGCGACGGCCTTCT
TCGTGGTGATGCTGCCGGGGCTCATCTGCGAGATCCCCGGCGGCGGGGGGCGGGGGCGGC
CCGAGTTCCACAGCATGAAGACCAACGGCATCGCCATGTTCGTCCACACCGTCATCTTCT
TCGCCTTCTGCGCCATCTTCATGGTCGCCGTCGGCGTCCACGTCTACGCCGGCTAAACCT
CCGGCGCCATGCCTATACATACTGCTGTACTAGTGCTAGTGCATGTAAGCAAGAGATCCA
GCGTGCCCTGTACGTTCAATGTTCGATTTTTATTTTTCCTCTATTATGATCTATATGTGC
TCAGGATTGTCTGTCGGTTCATCAACCTATGACTTATTGAATGGTTGATTTGAGCCATAT
CCCAAAATAAAAAAAAAAAAAAAAA

Homology of Contig U35_12957 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	None
Brachypodium v1_2	None
Arabidopsis v10	None