barSeed - Barley Seed Development Database

Probe CUST_39771_PI390587928

Source Contig U35_24930

barSeed

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_39771_PI390587928	Hv_44K_v2	CTCGTTTGAGCATTGTATTGGGTATATATGTACATATTTAGGACTCGTTCATTCGTTCAT	312	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_67029.1	491	2e-24	305 - 364	100	60 / 60	plus	ABC20981 ABC21462
MLOC	MLOC_67028.1	758	2e-24	686 - 745	100	60 / 60	plus	ABC20981 ABC21462
JLOC1	JLOC1_44216.1	1111	8e-25	780 - 839	100	60 / 60	plus
Harvest21	ABC21462	435	3e-25	313 - 372	100	60 / 60	plus	ABC21462
Harvest35	U35_24930	435	3e-25	313 - 372	100	60 / 60	plus

Contig Sequence (435 bp)

>U35_24930 435 Hv_44K_v2
GCCGGCGACCAAGAGGACCACGTACCAGAAGCAGGCGCACCAGTGCCATGTCTGCGGGCT
CGAGTTCGAGATGGGGCAGGCGCTCGGCGGCCACATGCGCCGGCACCGCGAGCAGGAGGC
GCCCGCCACCACGGCGCAGGCGCCGCCCGTCCTGCTCCAGCTTTTCGTCTAGCGCTGGAT
TGATTTCTCTCGAGTTCAATAGCTAGGCATATAGAGTATATCTGGTTCTAGTCCAGATTT
ACAGGTTGACCTATGTGTGCTATTTGGTTTGTACATTTGCTGCACACTAGGTTGTCTACT
CTTGATCCTTGGCTCGTTTGAGCATTGTATTGGGTATATATGTACATATTTAGGACTCGT
TCATTCGTTCATTACTGTTATTATCCATACTTTTTGATTCATACTTTTATTTTGTTCTAA
AAAAAAAAAAAAAAA

Homology of Contig U35_24930 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	None
Brachypodium v1_2	None
Arabidopsis v10	None