- Probe CUST_39766_PI390587928
- Source Contig U35_24936
Probe Details
| Probe ID | Chip | Probe Sequence (60 bp) | Probe location | Differentially Expressed |
|---|---|---|---|---|
| CUST_39766_PI390587928 | Hv_44K_v2 | AAGATCACTCATAAAGAATCTGAGGACCGAGAACTTGGCACGCAAGTTCAATCTCTAGCC | 480 | GeneList: yellowgreen MasterList: None |
Probe Values
| 3 dpa | 4 dpa | 5 dpa | 6 dpa | 7 dpa | 8 dpa | |
|---|---|---|---|---|---|---|
| Normalized | 0.713 | 3.317 | 2.979 | 2.238 | 0.554 | 0.741 |
| Raw | 16.591 | 126.531 | 93.059 | 114.666 | 9.315 | 13.793 |
Probe Sequence's BLAST hits in Barley Unigene Datasets
| Dataset | Hit | Hit Length | E-value | Position on Hit | % Identity | Match | Direction | Probes on Sequence |
|---|---|---|---|---|---|---|---|---|
| MLOC | AK356649 | 2835 | 2e-24 | 2372 - 2431 | 100 | 60 / 60 | plus | ABC42885 |
| MLOC | MLOC_20665.4 | 960 | 2e-24 | 640 - 699 | 100 | 60 / 60 | plus | ABC42885 |
| MLOC | MLOC_20665.3 | 2133 | 2e-24 | 1813 - 1872 | 100 | 60 / 60 | plus | ABC42885 |
| MLOC | MLOC_20665.1 | 1911 | 2e-24 | 1792 - 1851 | 100 | 60 / 60 | plus | None |
| MLOC | MLOC_20665.2 | 2463 | 2e-24 | 1990 - 2049 | 100 | 60 / 60 | plus | ABC42885 |
| JLOC1 | JLOC1_14329.2 | 2074 | 8e-25 | 1345 - 1404 | 100 | 60 / 60 | plus | |
| JLOC1 | JLOC1_14329.1 | 2552 | 8e-25 | 1823 - 1882 | 100 | 60 / 60 | plus | |
| Harvest21 | ABC26155 | 610 | 3e-25 | 487 - 546 | 100 | 60 / 60 | plus | |
| Harvest35 | U35_24936 | 604 | 3e-25 | 481 - 540 | 100 | 60 / 60 | plus |
Contig Sequence (604 bp)
>U35_24936 604 Hv_44K_v2 CATGATCTTGAGCAAGGGGGCTACACAGGTGAAGCACATGATTCGTGCGGTCCCTTGTTG TCGAAATCAGCAGCTGTGCATGAGAGTATCGTGGACAGGAATGGCCGGGTTTCAGAACCC ATGGCAAACCAGCATCTTCCATTTGTGAAGAGCTCCCCATTGTGGGCACAGGTTGAGGGA CTGGAAATATTCAGGAAAACACCACAGCGACCAAATTTCTATCAGTTCCAGCAGCATGGT CCAGAGGTCCGGGAAGGAATGGCACTAGGTTTGATGTTCTGTTTTGCTAATTTAGCAGAA AGCATAAACAGGCTGGATGTTCTGGACGCCAATGGACTACTTGAGCAGAAGATGACGGGT CTCGCATGGCTTGAGGCAAATGGTTTTGATGTCAAGGACCTGAGATCACGCGTGGAAACT TTACTCCACACAAATAATAGTTGCTTTGAACTACGGGATTCCATGAGAAAGCTGGAGGAG AAGATCACTCATAAAGAATCTGAGGACCGAGAACTTGGCACGCAAGTTCAATCTCTAGCC ATGGCTGTCCATCATCTTGAACTACATGCCTGTCTCATGCGCAGCATAATGCGGTCCGCC ATCA
Homology of Contig U35_24936 to Model Species (E-value threshold 1e-50)
| Pseudo-peptide dataset | Hit | Hit length | E-value | Description |
|---|---|---|---|---|
| Rice v7 | LOC_Os11g19730.1 | 773 | 7e-55 | protein|expressed protein |
| Brachypodium v1_2 | Bradi4g20140.1 | 910 | 3e-71 | |
| Arabidopsis v10 | None |