barSeed - Barley Seed Development Database

Probe CUST_39765_PI390587928

Source Contig U35_24937

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_39765_PI390587928	Hv_44K_v2	AAGTTTGTTATTGCTATAGATGACGAAAACGGTGACAACGTAGGGGATCTTGTCATGGCA	365	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_62417.1	2292	2e-24	1677 - 1736	100	60 / 60	minus	ABC01121 ABC01122 ABC01123 ABC01124 ABC01125 ABC01127 ABC01128 ABC01129 ABC01131 ABC01132 ABC01133 ABC01136 ABC01137 ABC01138 ABC01140 ABC01141 ABC01142 ABC01143 ABC01147 ABC01150 ABC01151 ABC01154 ABC01156 ABC01157 ABC01158 ABC01161 ABC01162 ABC01164 ABC01166 ABC01167 ABC01169 ABC01177 ABC01179 ABC01180 ABC01181 ABC01184 ABC16131 ABC30555 ABC31601 ABC31617 ABC31619 ABC31825 ABC37479 ABC49951
MLOC	MLOC_62417.5	2034	2e-24	1393 - 1452	100	60 / 60	minus	None
MLOC	MLOC_62417.3	2294	2e-24	1661 - 1720	100	60 / 60	minus	ABC01121 ABC01122 ABC01123 ABC01124 ABC01125 ABC01127 ABC01128 ABC01129 ABC01131 ABC01132 ABC01133 ABC01136 ABC01137 ABC01138 ABC01140 ABC01141 ABC01142 ABC01143 ABC01147 ABC01150 ABC01151 ABC01154 ABC01156 ABC01157 ABC01158 ABC01161 ABC01162 ABC01164 ABC01166 ABC01167 ABC01169 ABC01177 ABC01179 ABC01180 ABC01181 ABC01184 ABC16131 ABC30555 ABC31601 ABC31617 ABC31619 ABC31825 ABC37479 ABC49951
JLOC1	JLOC1_40846.8	2314	8e-25	579 - 638	100	60 / 60	plus
JLOC1	JLOC1_40846.7	2298	8e-25	579 - 638	100	60 / 60	plus
JLOC1	JLOC1_40846.6	2216	8e-25	481 - 540	100	60 / 60	plus
Harvest21	ABC24127	628	3e-25	366 - 425	100	60 / 60	plus
Harvest35	U35_24937	629	3e-25	366 - 425	100	60 / 60	plus

Contig Sequence (629 bp)

>U35_24937 629 Hv_44K_v2
CCAAGCGATAGGCTGAGAGTTGCCGCGACGATGCAAGCGATAGAGGTATATAAACATATT
TTTGGAGCTGATTTTCCGAAGATCGGTTAACGGGGATCGCCAGATGGACTGCGTTCTTCT
GAGCTCACATTCGCCATCATATAATACCGTTAACGCAAGGGCGTCGAAATGATCCTTTGA
ACGAGAACAAGAATGGGCCCATTTCGCAAGAACTAAACGGGCCCAGTGCTTCCTTCACAA
CTGTTGGTGCTGAAATCACTCAAGAAACAGGAGATTTCTTTGTCAGCGATGCCGAGGGTG
ACCCGGACAAACCGACGGACGGTTTCTCCTCAATCGAGGATGCTATAAATTCGTTGCGCG
AAGGAAAGTTTGTTATTGCTATAGATGACGAAAACGGTGACAACGTAGGGGATCTTGTCA
TGGCAGCCGATCTAGCTAGCCCGGAATCAATTGCATTCATGATCAGAAATGGTTCCGGTA
TCATCTCAGTGGGCATGAAGGAAGCGGACCTAGAAAGGTTGATGCTTCCTATGATGTCTC
CAGTCACAGAAATCGGCGACATTTCAGCTGTTGCTTCCACAGTGACAGTGGATGCCAGAG
TGGGCATATCCACTGGTGTATCAGCTGCA

Homology of Contig U35_24937 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os05g38570.1	537	2e-79	protein\|riboflavin biosynthesis protein ribAB, chloroplast precursor, putative, expressed
Brachypodium v1_2	Bradi2g23220.1	528	1e-86
Arabidopsis v10	None