- Probe CUST_39763_PI390587928
- Source Contig U35_24939
Probe Details
| Probe ID | Chip | Probe Sequence (60 bp) | Probe location | Differentially Expressed |
|---|---|---|---|---|
| CUST_39763_PI390587928 | Hv_44K_v2 | CGCGCGTGAGACTTGTGTGAGACCGAGTAGCCTGCCTGCCTGCCATGGGCAAGAAGAAGA | 62 | GeneList: midnightblue MasterList: None |
Probe Values
| 3 dpa | 4 dpa | 5 dpa | 6 dpa | 7 dpa | 8 dpa | |
|---|---|---|---|---|---|---|
| Normalized | 0.132 | 0.382 | 0.839 | 1.292 | 1.923 | 2.551 |
| Raw | 529.193 | 2289.799 | 4625.227 | 10743.973 | 5489.410 | 8087.060 |
Probe Sequence's BLAST hits in Barley Unigene Datasets
| Dataset | Hit | Hit Length | E-value | Position on Hit | % Identity | Match | Direction | Probes on Sequence |
|---|---|---|---|---|---|---|---|---|
| MLOC | MLOC_6435.1 | 649 | 2e-24 | 362 - 421 | 100 | 60 / 60 | plus | None |
| JLOC1 | JLOC1_4201.1 | 512 | 8e-25 | 220 - 279 | 100 | 60 / 60 | plus | |
| Harvest21 | ABC40880 | 307 | 3e-25 | 48 - 107 | 100 | 60 / 60 | plus | |
| Harvest35 | U35_24939 | 430 | 3e-25 | 63 - 122 | 100 | 60 / 60 | plus |
Contig Sequence (430 bp)
>U35_24939 430 Hv_44K_v2 ACACTTCAATCCACTCCCCTGCTTCCTCATCAGCTCCGGTTCCTCTCAGCTCGGTCGGCG TGCGCGCGTGAGACTTGTGTGAGACCGAGTAGCCTGCCTGCCTGCCATGGGCAAGAAGAA GAGCGGCGGCGGCGGTGGTGGCTGCAACGGCGGCGTGGAGAAGGTGGGGGCGAGGGAGTT CGCGCTGAAGGTGGCGATGCACTGCCGGTGCCACGGGTGCACGGACAGGCTGCGGGCGGC GGTGCGGGACCTCACACTGGCGACGGGGGTGGAGGCGGTGGACCAGTCGGCGGCCGAGGC CACCGGCGAGGTGCGGGTGCTGGCGACGTCCGACCCCGAGCGGCTCCGCAAGGGCCTCCG CATGGCCACCGGCAAGAAGGTGGACCTCGTCTTCCCGCCCGCCTAGGACCGCAAGAAGGG GGAGGGGGAG
Homology of Contig U35_24939 to Model Species (E-value threshold 1e-50)
| Pseudo-peptide dataset | Hit | Hit length | E-value | Description |
|---|---|---|---|---|
| Rice v7 | None | |||
| Brachypodium v1_2 | None | |||
| Arabidopsis v10 | None |