- Probe CUST_39760_PI390587928
- Source Contig U35_36912
Probe Details
| Probe ID | Chip | Probe Sequence (60 bp) | Probe location | Differentially Expressed |
|---|---|---|---|---|
| CUST_39760_PI390587928 | Hv_44K_v2 | GAAAAAAAGGCCGCTGGAAAGAAGCCACCTGGTGGTGCTCCCACCCCTGCGCCTGTTTCG | 244 | GeneList: green MasterList: None |
Probe Values
| 3 dpa | 4 dpa | 5 dpa | 6 dpa | 7 dpa | 8 dpa | |
|---|---|---|---|---|---|---|
| Normalized | 1.234 | 1.114 | 1.245 | 0.998 | 0.690 | 0.582 |
| Raw | 322.171 | 431.928 | 437.754 | 529.549 | 132.184 | 123.926 |
Probe Sequence's BLAST hits in Barley Unigene Datasets
| Dataset | Hit | Hit Length | E-value | Position on Hit | % Identity | Match | Direction | Probes on Sequence |
|---|---|---|---|---|---|---|---|---|
| MLOC | MLOC_65690.1 | 3116 | 3e-21 | 2059 - 2115 | 98 | 56 / 57 | plus | ABC44456 |
| JLOC1 | JLOC1_43236.1 | 3435 | 2e-21 | 2055 - 2111 | 98 | 56 / 57 | plus | |
| Harvest21 | ABC32387 | 346 | 3e-25 | 245 - 304 | 100 | 60 / 60 | plus | |
| Harvest21 | ABC05982 | 3155 | 6e-22 | 1983 - 2039 | 98 | 56 / 57 | plus | |
| Harvest35 | U35_36912 | 346 | 3e-25 | 245 - 304 | 100 | 60 / 60 | plus | |
| Harvest35 | U35_1741 | 3206 | 6e-22 | 2018 - 2074 | 98 | 56 / 57 | plus |
Contig Sequence (346 bp)
>U35_36912 346 Hv_44K_v2 TTGAGANGGGGCACGAGGGTAAGACACTGANGANGAGGTCCGGGACCGGGCTACACTTAA CCTCCAAACTCTGAAGGGNGAAGTNNGCTGAGGTAACTCTGAGAAGGACGTGAAGGAATT TCTATNGGGATCCTTTGATGTGCCTCTCGCCAACTTGGAAGCAAGTCTAAGAACCTANGA ACCATCTGAGGAGCCCTTNGATATTNCCTTGGTGACAAGAGAAGCCAGGTCACAGCCACT TCAAGAAAAAAAGGCCGCTGGAAAGAAGCCACCTGGTGGTGCTCCCACCCCTGCGCCTGT TTCGGCTGNNGATGCTNAACAGAAGATGCTNNCATCTATCCCTGAG
Homology of Contig U35_36912 to Model Species (E-value threshold 1e-50)
| Pseudo-peptide dataset | Hit | Hit length | E-value | Description |
|---|---|---|---|---|
| Rice v7 | None | |||
| Brachypodium v1_2 | None | |||
| Arabidopsis v10 | None |