barSeed - Barley Seed Development Database

Probe CUST_39747_PI390587928

Source Contig U35_31739

barSeed

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_39747_PI390587928	Hv_44K_v2	TTGCTCTTGCAAACTTGTGAGTCAAATTCCATTCTAGCGCGAACAACCTGAATGGCTGCT	27	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_63805.1	1860	2e-24	29 - 88	100	60 / 60	plus	ABC19199
MLOC	MLOC_63805.2	1740	7e-23	13 - 72	98	59 / 60	plus	ABC19199
Harvest35	U35_31739	248	3e-25	28 - 87	100	60 / 60	plus

Contig Sequence (248 bp)

>U35_31739 248 Hv_44K_v2
GATCGTCTTCGTCCACGGTGACAAACTTTGCTCTTGCAAACTTGTGAGTCAAATTCCATT
CTAGCGCGAACAACCTGAATGGCTGCTGCTGCTGCTCCTCCTCAACGACCTCGTGTCATG
GTGCTACCCTTTCCTGCACAGGGCCACGTGATCCCGCTCATGGCACTGTCCCGCAAGCTC
GTCGAGCACGGCTTGGAGATCGACTTCGTGAACACCGAGTTCAACCACGGCCGCGTCCTC
CAAGCCTT

Homology of Contig U35_31739 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	None
Brachypodium v1_2	None
Arabidopsis v10	None