barSeed - Barley Seed Development Database

Probe CUST_39725_PI390587928

Source Contig U35_31741

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_39725_PI390587928	Hv_44K_v2	ACTTTTGAAGGTCATAAAGGTGCTGTTTGGAGCTGTTGCCTTGACACAAATGCTCTGCGT	443	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_60900.1	1752	2e-24	475 - 534	100	60 / 60	plus	ABC06089 ABC11427
JLOC1	JLOC1_39750.1	1740	8e-25	450 - 509	100	60 / 60	plus
Harvest21	ABC06089	1670	3e-25	431 - 490	100	60 / 60	plus	ABC06089
Harvest35	U35_31741	566	3e-25	444 - 503	100	60 / 60	plus
Harvest35	U35_1813	1946	3e-25	431 - 490	100	60 / 60	plus

Contig Sequence (566 bp)

>U35_31741 566 Hv_44K_v2
CCCACCCTTTCGCCTAGTGCCCCTAGGCCGGCCTCCGGGCTCGAACCCACTGCGCTAACA
AATAATAAATCCGCGTATAAATCTACCCCACTGACCCAGATCATCTCGTCCCCATCCGCC
CCCCGCCGATCCGCGCCACAATTCCCATCTGACTTCCCCCAATTTATTTTGCTTCGATTC
CATTCTCTTGGTTCGTTCGTAGGGGCTAGGGTTGGGAGCCGATCGCGCGCCGCCGGAGCC
GATCGATAGGGTTAGGGTTAGAGGGCGAAGGGGCTGAGATGGAGAAGAAGAAGGCGGCGG
TGCCGCTGGTCTGCCACGGCCACTCGCGGCCGGTCGTCGACCTGTTCTACAGCCCCGTCA
CGCCCGACGGCTACTTCCTCATCAGCGCCAGCAAGGACTCAAATCCAATGCTTCGTAATG
GTGAGACTGGAGATTGGATTGGGACTTTTGAAGGTCATAAAGGTGCTGTTTGGAGCTGTT
GCCTTGACACAAATGCTCTGCGTGCTGCCTCTGGTTCTGCAGACTTTTCAGCTAAAGTGT
GGGATGCACTAACAGGCGATGAACTA

Homology of Contig U35_31741 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os06g39760.1	346	4e-58	protein\|WD domain, G-beta repeat domain containing protein, expressed
Brachypodium v1_2	Bradi1g36840.1	341	7e-57
Arabidopsis v10	AT3G15610.1	341	9e-53	Transducin/WD40 repeat-like superfamily protein \| chr3:5291076-5292796 REVERSE LENGTH=341