barSeed - Barley Seed Development Database

Probe CUST_39720_PI390587928

Source Contig U35_17451

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_39720_PI390587928	Hv_44K_v2	TTATAGAAACGCACACTAGTCATAAAATTCACGGGATGAGTACTTTAGTCACACATAAGA	631	GeneList: lightsteelblue1 MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	4.103	2.198	0.940	0.909	0.369	0.557
Raw	84.215	64.621	27.079	43.805	4.985	9.422

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_77951.1	1660	2e-24	1143 - 1202	100	60 / 60	minus	ABC07811
MLOC	MLOC_77951.2	1295	2e-24	778 - 837	100	60 / 60	minus	ABC07811
MLOC	MLOC_77951.3	1311	2e-24	794 - 853	100	60 / 60	minus	ABC07811
JLOC1	JLOC1_51957.1	579	8e-25	458 - 517	100	60 / 60	plus
Harvest21	ABC07812	672	3e-25	610 - 669	100	60 / 60	plus
Harvest35	U35_17451	694	3e-25	632 - 691	100	60 / 60	plus

Contig Sequence (694 bp)

>U35_17451 694 Hv_44K_v2
TTCCTGGTGGTATAGGTCCATTTGGACTTGTTATTCTGGCCTCCGACAACATGGACGAGC
ACACTGAGGTGTATTTCAGAGTCTACAAGTCACAGGAAAAGTACATGGCACTCATGTGCT
CTGACCTAAGAAGGTCTTCCCTGAGACCAGGACTGGAGAAACCAGCCTATGGAGGCTTCT
TTGAATTTGATCTTGCAAAGGAAAGGAAGATATCACTCAGAACCCTGATTGACCGGTCGG
CGGTGGAGAGCTTCGGCGGCGGGGGTAGGGTTTGCATCACATCCAGAGTTTATCCGGCGG
TGCTCGCCGACGTCGGCAGGGCCCACATTTACGCCTTCAACAACGGAAGTGCCATGGTCA
GGGTGCCACAGCTCAGCGCATGGACCATGAGGAAGGCACAAGTGAATGTGGAGAAGGGTT
GGAGTGCTATTTAAAGCAGAGGAGCAATTCGATTTTCTCGATTCTTTTACTATCATTCAT
GAGCATTGCCTGGCAGAAATAAGGACATTCAGCAGGAAAAAATAGCCTGTCATTTCTTTG
ATGATCTCTAGTATTCATATATTGTAGTTACTACTTAGTAAGCCCTTCCCATCTCAATTA
CTTGTACCAATTCAATTACTTGTACCAATTTTTATAGAAACGCACACTAGTCATAAAATT
CACGGGATGAGTACTTTAGTCACACATAAGAATC

Homology of Contig U35_17451 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os01g73580.1	513	4e-68	protein\|glycosyl hydrolases, putative, expressed
Brachypodium v1_2	Bradi2g61830.1	582	6e-70
Arabidopsis v10	None