barSeed - Barley Seed Development Database

Probe CUST_39718_PI390587928

Source Contig U35_31746

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_39718_PI390587928	Hv_44K_v2	AAGTGCATATACCAATCACCCCTCCGCATATCAGCAAGGAACTTCCCAAGCCACGGCATA	351	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	AK361332	2003	2e-24	1040 - 1099	100	60 / 60	plus	ABC22036
MLOC	AK359988	1196	2e-24	366 - 425	100	60 / 60	plus	ABC22036
MLOC	MLOC_14423.3	881	7e-23	11 - 70	98	59 / 60	minus	None
MLOC	MLOC_14423.2	897	7e-23	11 - 70	98	59 / 60	minus	None
MLOC	MLOC_14423.4	1094	7e-23	11 - 70	98	59 / 60	minus	None
MLOC	MLOC_14423.5	1113	7e-23	11 - 70	98	59 / 60	minus	None
MLOC	MLOC_14423.6	1104	7e-23	11 - 70	98	59 / 60	minus	None
MLOC	MLOC_14423.1	1602	7e-23	11 - 70	98	59 / 60	minus	None
JLOC1	JLOC1_9853.4	1037	4e-23	968 - 1027	98	59 / 60	plus
JLOC1	JLOC1_9853.3	1041	4e-23	972 - 1031	98	59 / 60	plus
JLOC1	JLOC1_9853.2	1032	4e-23	963 - 1022	98	59 / 60	plus
JLOC1	JLOC1_9853.1	1040	4e-23	971 - 1030	98	59 / 60	plus
Harvest21	ABC12830	1410	1e-23	1253 - 1312	98	59 / 60	plus
Harvest35	U35_31746	577	3e-25	352 - 411	100	60 / 60	plus
Harvest35	U35_5831	1411	1e-23	1253 - 1312	98	59 / 60	plus

Contig Sequence (577 bp)

>U35_31746 577 Hv_44K_v2
AGCTAGGGTTCCTAGCCGCCGCCACCACTGCCGGCCCGCCGCCGCGGCGCGCCCAGCCGG
CCGGAGCCTCCGCTGCCCCGCCTTCGGTACAATATCCCAGCAGCGCATCCCTCCGTCAAG
CAGCCGCTCCCACCAGCGGCGCCTCCCTCCCTGGAGCAGGCGCTCCCGCCCGGAGCTACG
CCGGCGACCAGTCCATAGGCAGGTTGAACAGGGCATCTACATTGTCAATTGGAGGGGCTT
GGAACTGCTTCGGCATCAACAGTAGAGCAAACACGAAGCAGCACAGGTTACACCTCCACA
GCCTGGGACAGCACAAGCTGCAGCGGCTTCAGCAGCCACAAATCCATATGCAAGTGCATA
TACCAATCACCCCTCCGCATATCAGCAAGGAACTTCCCAAGCCACGGCATACCAGCAAGG
AATCCCCCAAGCCGCGGCATACCAGCAAGGAACTTCCCAAGCCACGGCATACCAGCAAGG
AACTTCCCAAGCCGCGGCATACCAGCAAGGAACTTCCCAAGCCGCGGCATACCAGCAAGG
AAACCCCCAAGCCGCGGCATACCAGCAAGGAAACCCC

Homology of Contig U35_31746 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	None
Brachypodium v1_2	None
Arabidopsis v10	None