barSeed - Barley Seed Development Database

Probe CUST_39717_PI390587928

Source Contig U35_17453

barSeed

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_39717_PI390587928	Hv_44K_v2	ATCTGGTAAGTGCTAAACAAATGGGAAGTGGTGCAATGAGAACTCATTTCCTCCAAAAAA	1532	GeneList: orangered4 MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	3.034	3.519	1.392	0.807	0.388	0.439
Raw	128.019	237.968	78.093	70.980	12.140	14.684

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
JLOC1	JLOC1_39467.1	1056	2e-21	964 - 1017	100	54 / 54	plus
Harvest21	ABC07885	1128	3e-25	1058 - 1117	100	60 / 60	plus	ABC07885
Harvest35	U35_17453	1603	3e-25	1533 - 1592	100	60 / 60	plus

Contig Sequence (1603 bp)

>U35_17453 1603 Hv_44K_v2
CCACACATATGGCTAGCCAAATCTCTGGTACCATAACATCTAGTGGGGTGTGCTATAATG
ATAAACACAGAATGCCATGTAAGCTGAAAGGACTACATTGTGTAGCATCGAATTGTTTAC
CACAAGAGGTAGAGGTAAGGAAGTGGATGAATGGATATCATATCATCCGGTCCTATCCAA
ACGATAGACATCGGAAAACGAATGCGAAGTCCAATGGTTACCTGCTCCAACAAGGTCTGA
ATCTTCGGTGCCTTTCTTATGGTTCTCGTAGTAGCAGTGAAACTAAAGAGTGCACTAGTC
CTGAAGATGGCAATAATCCTTACAGGGGTTTTGATGAGCATCCAAGAGGAATGTCACATT
TTTCAGATAGTCAAGCTGCAGCTCAGAAAAAAACACTCTATTCTACTCAAGGGCTGTCTA
AAGCGTGCGAATTTGTCTATAATGATGCAAAGTTTGTGAATGAAAGAGCTCAGAGTGATA
TTCTTTTGCTTTCACGTGGAATCACAAGGTTGAACAAACGTGCATCTAAGGATGTTGCTG
TATTAGGTTTGGGGTTTCTCAAGCTTGATGATTCCCTGAAAGCTCGTGCAAGGAAGGACA
CCCAAAAGATTGACAACAGTGTGAAGGAACGGGCAGCCCACCTGACAAATTTTGCTAGAA
TATTGAAGGAGCGAGCTCATTCGGACTTGAAGAAAGCAGCAGATCAACATTGGAGTGATG
GAGCTTTGGAGGCAGATCTGCGACGAGCTGACATGGTTGTTCGACGACGTGCCATGGAGG
ATGCTTTCATGGCTTTAAAGTTTGTTCGGGATATTCATGACATGATGGCAACCAAACTAC
AATATCAGTTCATCACACTCGAGAAAAATGGGAAGATTCTTAAGTTGTTCCCTCGTGAAG
TTTCTACTGATCAAATCGCTGCCATAGAGGATGCATATCTTAATATGGCATCTGCCTTAT
CTGAGGCTGATGGTATCGACTACACCAATCCCGAGGAGCTTGAATTATTAGTAGCGGCTC
TTATTGACCTGGATGCCATGGATGGGAAAAAGAGTGTTTCCTTGATAGTTGAATGTTCAA
GTTCTCCAGATGTTAATACCAGGAAAGCTTTGGCTAATGCATTGGCTGCCGCTCCATCCA
TGTGGACCCTAGGGAATGCTGGGATGGGCGCATTACAGAGATTGGCTCAAGATTCCAATC
CCGCTGTAGCTAGCTCTGCAGCAAGAGCCATTGGTGAACTCAGAAAGCAGTGGGAGCTTG
AAGAGGGTGACAGTCTGAGGTTTGTCATGAACCAAAACTTGGTTTCCGATGAGACTGATG
ATGACAGTTGAGTAGCAGAGATGGTATCACCACGTGAGGTGTAAATCAGATGAATGACTC
AACTAAAGATCAATGAACCTTCCACTGTAACACGTACAGACTGTAATAGGAACCGAAAAA
AGTGTAACTAAGTCGACTGCATTTCTGTGTGTTCCGTCGCAGCATAAAATGGTTTGCTTG
TTGACTACCTCACGAGAAGGCATGTCTATGATATCTGGTAAGTGCTAAACAAATGGGAAG
TGGTGCAATGAGAACTCATTTCCTCCAAAAAAAAAAAAAAAAA

Homology of Contig U35_17453 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os05g05600.3	458	0.0	protein\|ATA15 protein, putative, expressed
Brachypodium v1_2	Bradi3g10770.3	457	0.0
Arabidopsis v10	AT1G66330.1	417	1e-118	senescence-associated family protein \| chr1:24729880-24732144 REVERSE LENGTH=417