barSeed - Barley Seed Development Database

Probe CUST_39716_PI390587928

Source Contig U35_17454

barSeed

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_39716_PI390587928	Hv_44K_v2	GGAATGTGTCCGCTTGTTGTTGGTGTTGTTATCGTGACAAATTATCTTTTCCTAATTAAA	991	GeneList: darkorange MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	1.046	0.910	4.793	3.082	0.488	0.272
Raw	150.007	208.030	991.173	973.887	58.457	34.768

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_43199.1	1194	9e-22	34 - 91	98	57 / 58	minus	ABC12564
JLOC1	JLOC1_27916.1	1158	5e-22	53 - 110	98	57 / 58	minus
Harvest21	ABC12564	793	2e-22	665 - 722	98	57 / 58	plus	ABC12564
Harvest35	U35_17454	1116	3e-25	992 - 1051	100	60 / 60	plus

Contig Sequence (1116 bp)

>U35_17454 1116 Hv_44K_v2
ATAACGCCAAGACTAGATAGCCAGACTCACACACTCGCAGTAGCTAGCATAGCTAGGTGC
TTGACCTAGCTACAACCTCCCGTGGCCAATATGGCGTCCAAGGTGTCGGCTTCATGTGGC
CTCTTCCTTGCCCTTAACCTCCTCTTGTTTGCAGTGACCAGTGCCTGCCCAAGCTGCGGC
GACTCGGGCAACAATGGTGGCCACGGGAGCAGAGGCGGTGGGAGAGGTGGTGGCGGTGGA
AGTGGCAGCGGCGGCGGAGGGCATGGAGGCGGGGGCGGCGGAGGCCAAGGCGGCGGCAGC
GGAGGATATGGAGGCGGAAGCGGAGGGGGTGGCGGAAGTAGCGGTGGCGGGATCATTGGC
GGCGGTCCTGGCGGTGGGATCATCGGCGGCGGTCCAGGCGGTGGCATCATCGGCGGAGGC
CCTGGTGGCGGGATCATCGGCGGCGGGAGCGGTGGTGGTGGCAGTGGCGGCGGCGGCGGT
GGCGGGTATGGAGGAGGAGGCGGCGGCGGGACGAGCGGGTGGTATGGCAAGTGCCCGACC
GACGCGCTGAAGCTGCACGTGTGCGCCAATGTGCTGGATCTGATCAAGGCGAAGGTGGGC
GTGCCTCCGTTGAATGACCGGTGCTGCCCGCTGCTCAACGGGCTCGTCGACCTGGACGCC
GCGATCTGCCTCTGCACCGCCATCAAGGCCGACGTGCTAGGCATCCACATCAACCTCCCC
ATCCACCTCAGCCTCATCCTCAACTTCTGCGGCAAGGGCGTCCCGACCGGCTTCATGTGC
CCGACCTAATCCCAGTGATAGCATTGAGTTCGTCGTATGATCTCCCACAAAGAAAAGGGG
ATGCGAGAGGTCACGTCCATGCATGCATGCATGATTTCGACGAAGTGCATGCATACGTTC
AATTATTTGCTTTGCTTTAGTTGTTTTGTATTGTTTCGCAAACGTTTGAGTCGTAGCTTG
TGCTAGTGGCCATTGCATTTTACTTTGCGATGGAATGTGTCCGCTTGTTGTTGGTGTTGT
TATCGTGACAAATTATCTTTTCCTAATTAAAAAAAAAAAAGATGCATATCATCTAATGGA
TTGATTTAGTATTTCCATGAAAAAAAAAAAAAAAAA

Homology of Contig U35_17454 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value
Rice v7	None
Brachypodium v1_2	Bradi3g33060.1	213	1e-57
Arabidopsis v10	None