barSeed - Barley Seed Development Database

Probe CUST_39715_PI390587928

Source Contig U35_31748

barSeed

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_39715_PI390587928	Hv_44K_v2	ATGGGGATCGCTTACAAATTTACTTCGTTTGCGTGCGTCGTGCAGCCCTTGGGCCAGGTC	366	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	AK373803	1214	2e-24	285 - 344	100	60 / 60	plus	ABC02455
MLOC	MLOC_50636.1	219	7e-23	108 - 167	98	59 / 60	minus	None
Harvest21	ABC46248	408	1e-23	256 - 315	98	59 / 60	plus
Harvest35	U35_31748	586	3e-25	367 - 426	100	60 / 60	plus

Contig Sequence (586 bp)

>U35_31748 586 Hv_44K_v2
GTGTTAGGTGGGCTGCCGTGCCATCGGTGTCTACTCTGCTCTGCCGGCCACCAACCGCGC
TCGCCTCCACAACCCTTCCGGTCTTCGATCTCGCCGGTCGCCACACCGTGCCCGCCAGCT
GAAGAGAAGTGATCAAGGCGCCATGGCCGAGCCGCCGCCGGCAGCGGCGGTGAGCAGGAA
GCTGTACGGGTACGCGCTTTCGTCCAACTCGGTGCGCATCGCGGCGCTGCTCAACGAGAA
GGGCCTCGACTACGAGCTCGTCGTCGTCGACGACACCAAGGCGCCGGAGTTCCTCGCCAT
CAACGTACGTACGCCCGCCCACGCACTCCCCAGCCACTGCTACACTGCTGCACTGATCAT
CAGCCGATGGGGATCGCTTACAAATTTACTTCGTTTGCGTGCGTCGTGCAGCCCTTGGGC
CAGGTCCCGGCGTTCCAGGACGGCGACGACATCCTTTTCGAGTCGCGCGCCATCAGTCGG
TACATCGCGACCAAGTACAGGTCCTCCGGCACGGACCTGCTGCCGGCGACGGCGTCGGCG
AAATTGGAGGTGTGGCTGGAGGTGGAGTCGCACCACTTCTACCCGG

Homology of Contig U35_31748 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	None
Brachypodium v1_2	None
Arabidopsis v10	None