barSeed - Barley Seed Development Database

Probe CUST_3970_PI390587928

Source Contig U35_25380

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_3970_PI390587928	Hv_44K_v2	CAAAAACTGGGAAGTGGAAATCTTCCATCCTGCTGCTAGTTAACTATGCCCTTGTAACGT	466	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_57296.1	755	2e-24	486 - 545	100	60 / 60	plus	None
MLOC	MLOC_57296.3	1844	2e-24	162 - 221	100	60 / 60	plus	None
MLOC	MLOC_57296.2	2402	2e-24	473 - 532	100	60 / 60	plus	None
JLOC1	JLOC1_37113.2	2599	8e-25	382 - 441	100	60 / 60	plus
JLOC1	JLOC1_37113.1	2705	8e-25	488 - 547	100	60 / 60	plus
Harvest21	ABC51800	641	3e-25	227 - 286	100	60 / 60	plus
Harvest35	U35_25380	881	3e-25	467 - 526	100	60 / 60	plus

Contig Sequence (881 bp)

>U35_25380 881 Hv_44K_v2
TTCCTTCTCCTCCACCTCCGTCTTCCTGCCGGCCGGCGAGCTCGCCATACGCAGCCTGCC
CGAGCGGATTCGCCCTGTAAATGTCTGGAGGCCTCTCCGGTTTCGTCGAGGTGTCGTCCG
GGCTAGAGGTGGCGCTCGTTCCCGTCTTAGACGCGCTGGTCGTTTCCTTTCTCAAGCGCT
CGTCGTCCCCGTCGCCGGAGAAGAAGCTGCGTGCTTGCACCGGAGGCTTCATCAACGAAG
GTTGAACTAATCTCGCTGCCTTTCAAGCCTCACACAAAGAAACGCCGAGGAACCTTCCTG
GCGGATCTGCAGGACCGAACAAAACAAACAAGCCGGAAGGTGAAGAAGGTTCAGAGAATT
CACTGGAAAGTTGAGGTGATGGCTCCAAGCACCGTTGATCCGAGGTGCATATCTCCCATC
ACTGAAGATGGGTCGATGGACAGACGAGGAAAGCCAGCGGTCAAAGCAAAAACTGGGAAG
TGGAAATCTTCCATCCTGCTGCTAGTTAACTATGCCCTTGTAACGTGCGCCTTCTTCGGC
GTCGGGGTGAACCTGGTGGTGTTCCTGCGGAGGGTGCTCCACCAGAACAACGCCGAGGCG
GCCAACAGCATCAGCAAATGGACCGGCACCGTCTACATCTTCTCCCTCATCGGCGCCTTC
ATGAGCGACTCTTACTGGGGCCGCTACATCACCTGCGCCATCTTCCAGATGATCTATGTC
ACGGGACTCGTGATACTGTCACTCGCGTCGTGGTTCCTGCTGGTGAAGCCCACCGGGTGC
GGCGACGTGGAGACGCATTGCGACCCGCCGTCGACGGCGGNGGTCGCGCTCTTCTATCTG
TCGACGTACATGATCGCGTTCGGCAACGGCGGGTACCAGCC

Homology of Contig U35_25380 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os02g48570.1	585	7e-84	protein\|peptide transporter PTR2, putative, expressed
Brachypodium v1_2	Bradi3g53380.1	586	3e-88
Arabidopsis v10	AT4G21680.1	589	6e-52	\| Symbols: NRT1.8 \| NITRATE TRANSPORTER 1.8 \| chr4:11517540-11519576 REVERSE LENGTH=589