barSeed - Barley Seed Development Database

Probe CUST_39708_PI390587928

Source Contig U35_17459

barSeed

Links

Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_39708_PI390587928	Hv_44K_v2	AATCTTGTACTTCGTACATGCTCACTTTCCATTTTGTGCATAGAAGAACATGCATGGAAA	702	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	AK356136	1797	2e-24	1722 - 1781	100	60 / 60	plus	ABC07244 ABC07245 ABC07246 ABC48713 ABC49860
MLOC	AK367993	1854	2e-24	1779 - 1838	100	60 / 60	plus	ABC07244 ABC07245 ABC07246 ABC48713 ABC49860
MLOC	MLOC_6330.1	1647	2e-24	1575 - 1634	100	60 / 60	plus	ABC07244 ABC07245 ABC07246 ABC48713
MLOC	MLOC_6332.1	512	2e-24	238 - 297	100	60 / 60	plus	ABC07244 ABC07245 ABC07246 ABC48713
MLOC	AK357610	1927	7e-23	1871 - 1927	100	57 / 57	plus	ABC07244 ABC07245 ABC07246 ABC48713 ABC49860
JLOC1	JLOC1_4120.1	880	8e-25	439 - 498	100	60 / 60	plus
Harvest21	ABC48713	600	3e-25	195 - 254	100	60 / 60	minus	ABC48713
Harvest21	ABC07245	665	5e-23	15 - 73	98	59 / 60	minus	ABC07245
Harvest35	U35_47558	600	3e-25	195 - 254	100	60 / 60	minus
Harvest35	U35_17459	809	3e-25	703 - 762	100	60 / 60	plus
Harvest35	U35_17460	1729	2e-22	1675 - 1729	100	55 / 55	plus

Contig Sequence (809 bp)

>U35_17459 809 Hv_44K_v2
GCACTGAAGATCCTCAATACCAAGAGAAGAGAATGGTTGCTCAAAGAAATGGAAAGCTTG
CAATCCAAAAATTCCAAGTCTGTGTAGGCAAAGAGAAGCAAACTATTTCTGAAATGCTGC
CATACTTGAGACTAGGATACATTTCAGATCCAGATGAAATGCAATGTATACTTTCGTCGG
AAGGTGATACATGTCCAGTTAGTCCTTGCTCAGAGCGAGCTGTACTGGACCAACTTGTTG
TGTACCTGAAATCAAGATTGGCTGGTTATCCGACTAATTTGGATGAGGATGAAGCAATGT
TGGCCGATGGCAGTTTGGAACCAAAGAAAGAAGTTGCTACTAGACTTGTAAGGTTAGAGA
AGAAAATGCTGCATGGCTGTCTTGAGGCTGCTAACGAGTTCATAAGTGGCTTGCCTGATC
ATACCGTGTCACCTTGCCCTGCACTATATGCTCCTGAATTGAAATAAGAGAAGCAAGCAT
GCAGTGAGATTCAATTATTGCTAGATGGACATATCACTTCAAAACACGTTCTCTATTAAG
TGCATCATTAGAAGGTAACCTGTTCGGGCGTAACAAGGATATTGTTGGTCTCGAGTAGAT
CGGCAAACAGTTTTATTGCACAAAAGTGTGCATTGATTTGTTTTTTCAGCCATGTAGATT
CGATCTGTATGTTCACTATGATGATTGAGAGTTAGCATTGGTAATCTTGTACTTCGTACA
TGCTCACTTTCCATTTTGTGCATAGAAGAACATGCATGGAAAGCGGCCGCTCGAGCATTA
TGGAAAGGGCCCAATTCGCCCTATAGGAG

Homology of Contig U35_17459 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os12g13460.1	510	1e-88	protein\|SET domain-containing protein, putative, expressed
Brachypodium v1_2	Bradi4g39580.1	517	3e-97
Arabidopsis v10	AT5G14260.3	514	5e-63	Rubisco methyltransferase family protein \| chr5:4601139-4603873 FORWARD LENGTH=514