barSeed - Barley Seed Development Database

Probe CUST_39705_PI390587928

Source Contig U35_29431

barSeed

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_39705_PI390587928	Hv_44K_v2	TATTTTTCTAACCCTTTCTCCTTCTCAACTCTCAAGTGAAGTGGGTTCCATCGCCGATCG	473	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	AK372868	2413	2e-24	662 - 721	100	60 / 60	plus	ABC13530
MLOC	MLOC_1711.1	482	2e-24	50 - 109	100	60 / 60	plus	None
JLOC1	JLOC1_1046.1	463	8e-25	50 - 109	100	60 / 60	plus
Harvest21	ABC28709	551	3e-25	474 - 533	100	60 / 60	plus
Harvest35	U35_29431	551	3e-25	474 - 533	100	60 / 60	plus

Contig Sequence (551 bp)

>U35_29431 551 Hv_44K_v2
CCTCCACCCACTAGCTTTTTCTTGGAAGCGAGAGGAGGGACGGGGAGGGAGAGGAGGCGG
AGCGGAGAGGAGGGCGCCGGTGAGCTTTGCCAGGGAAGCTGCTCGCGTGGGGCTTTGCAC
GGCCGGGCCCTGCCCACGCTTCCCTCTTGCTCACTCGCTCCCACCAACGCTCGCCTCTCA
CCTACTCTCTCTGTCTCTTTCTCCCTTATCTCCTTCCAAGATCCCTTTTCCCCTTTCATC
TACTACGAGTAGTTTGCTAGGACCATTCTTTGATCTTTCCTTGGCTCCAAATACTCCCGT
TCCAGCAGCGGAGATCCCACCTCGGTTCCCTCCCGTCCGAGTGATTAGCTCGAACTTGAC
CTTTTTTTTGTGTGCCTGCTCATCAGTTCGTGTTTCAATCCGAGAAATCCCCGCTCGGCA
ACAAGTGCCCCCCCCCCCCTCTCCGGGCTTCGATTCGATCGAATCCTGCCCAATATTTTT
CTAACCCTTTCTCCTTCTCAACTCTCAAGTGAAGTGGGTTCCATCGCCGATCGGCCGGAG
AAAGTGGTTGA

Homology of Contig U35_29431 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	None
Brachypodium v1_2	None
Arabidopsis v10	None