barSeed - Barley Seed Development Database

Probe CUST_39700_PI390587928

Source Contig U35_29434

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_39700_PI390587928	Hv_44K_v2	ATGGCAAGAAGAAGAAGTCCTTCATGTCCAACATCTTCCGCAAGAAGGGCCGCAGCGGCG	233	GeneList: brown MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	1.691	2.683	0.677	0.686	0.991	0.924
Raw	12.382	26.667	5.672	7.904	3.174	4.339

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_59843.1	1999	2e-24	108 - 167	100	60 / 60	plus	None
Harvest21	ABC28713	522	3e-25	234 - 293	100	60 / 60	plus
Harvest35	U35_29434	522	3e-25	234 - 293	100	60 / 60	plus

Contig Sequence (522 bp)

>U35_29434 522 Hv_44K_v2
CAAGGAGCTTCCTCTCACGACAGACAGACAGAGACAGACGAGGCGCCCGTCCCGGATGAG
GGTCCATGCATCACGATCACGCCGTCCCCTCCTTTTTACCGCGACCGCGACCGCGACCGC
CAGCGGCTGAATGTCAACCCACCACCAGCACCACCACCACCACCACAGCCTCAGCAGCAA
TGCCGTCCCCCGCGACATCCCCAAGCCCGCCTCCGCCGACGAGCTCGCCAAGAATGGCAA
GAAGAAGAAGTCCTTCATGTCCAACATCTTCCGCAAGAAGGGCCGCAGCGGCGCCGGCGC
CGGCACCTCCGACAAGCGCCCGCCCTCCCGCCGGGACCGGGACTTCCTCTTCGATTTGGA
AGAGAAATGCGGCGAGAGGGCGGACGCCGCGGCGGCGGAGTTCCTCGACGCGACCCCCAC
CGTCCGCAAGAGTGTCTCAGATCGGCATTGCGCGTCGCGAATCGAGAGCCTGACCCTCAG
CTGCCTGGACTCGCCCAACAGGCAGAACGTCGACACACGGGA

Homology of Contig U35_29434 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	None
Brachypodium v1_2	None
Arabidopsis v10	None