barSeed - Barley Seed Development Database

Probe CUST_39699_PI390587928

Source Contig U35_29435

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_39699_PI390587928	Hv_44K_v2	TCTCCGACAAGCTCTGCTGCAAGGCCTGCAAGATCATCAAGGAGATCGAGATCGTGGTGC	240	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_56609.2	982	7e-23	575 - 631	100	57 / 57	plus	None
MLOC	MLOC_56609.1	988	7e-23	575 - 631	100	57 / 57	plus	None
MLOC	AK361733	1234	9e-22	319 - 373	100	55 / 55	plus	ABC08263
JLOC1	JLOC1_36631.1	905	4e-23	512 - 568	100	57 / 57	plus
Harvest21	ABC08264	882	1e-23	290 - 346	100	57 / 57	plus
Harvest21	ABC46329	330	6e-22	241 - 297	98	56 / 57	plus
Harvest35	U35_29435	440	3e-25	241 - 300	100	60 / 60	plus
Harvest35	U35_17793	1322	1e-23	290 - 346	100	57 / 57	plus

Contig Sequence (440 bp)

>U35_29435 440 Hv_44K_v2
CCCCACTCCATCGCCGCTCCTTCCCGGCCCTTCCTCGGCTCCTCGCATTGCAGGGAGGAG
GCTCAATCAAGATGCCGACCATCATCATCAAGGTGGACCTGGACTGCGCCCGCTGCCACC
GCAAGATCGAGAGGGTGCTCGACAGGATCAGAGAGAAGGGCGAGTTCGTCATCGACGACA
TCGAGTACGATGAGAAGAACAACAAGGTGATCGTGAAGGGGCCCTTCGACGCGGACAAGC
TCTCCGACAAGCTCTGCTGCAAGGCCTGCAAGATCATCAAGGAGATCGAGATCGTGGTGC
CGCCGCCGCCAGCGGTCCTGGAGGTGCCCAAGGCCGAGCCCGAGCCGGAGCCGCCCAAGA
GTGAACCGGAGCCGCCCAAGGAGGAGCCGCCGCCCCCGCCCACGCCCAAGAAGGAGGAGC
CCACGCCGCCGCCGCCCAAG

Homology of Contig U35_29435 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	None
Brachypodium v1_2	None
Arabidopsis v10	None