barSeed - Barley Seed Development Database

Probe CUST_39691_PI390587928

Source Contig U35_17460

barSeed

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_39691_PI390587928	Hv_44K_v2	ACCTTGCCCTGCACTATATGCTCCTGAATTGAAATAAGGTAACCTGTTCGGGCGTAACAA	1488	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	AK356136	1797	2e-24	1536 - 1595	100	60 / 60	plus	ABC07244 ABC07245 ABC07246 ABC48713 ABC49860
Harvest21	ABC07244	1652	3e-25	1489 - 1548	100	60 / 60	plus	ABC07244
Harvest35	U35_17460	1729	3e-25	1489 - 1548	100	60 / 60	plus

Contig Sequence (1729 bp)

>U35_17460 1729 Hv_44K_v2
CGAAGCTCGAGCGCCACCCATGGCCTCCTCCGCCTTGTCCGGCACCCACCATCGCCTCCT
TCTCCCCTGTTTCCTGCGCCGCCTCCCTCAGCCCGGTTCGCGCTCGTGCTCCCGCCTCCG
CCTCGCCGCCTGCCACGCCGACACCCTCCTTTCCTCCTCCGGGGCCCAGGGGCCGCCCTC
CCCCGCGGCGTGCTTGTCCGCATCCTCCGCTGGCGGGTTCTCTGACTGGCTACTCACGAA
TGGCCTGCCGCCGGGCAAGTTGGCCATCCTGGAGCGCCCCGTCCCGTGCTCTCGCGGGGG
CAGAGACCGGCCATTACACTTCGTCGCTGCTGGGCAGGACCTCGAGGCGGGGGATGTGGC
TTTCGAGGTGCCCATGTCGCTCGTTGTCACGCTGGAGCGGGTTCTCGGCGACGAGTCCGT
CGCTGAATTGTTAACGACAAACAAATTGTCTGAGCTGGCATGCTTGGCATTGTATCTCAT
GTATGAGAAGAAGCAAGGAAGAGATTCACTTTGGTACCCGTATATTAAAGAACTTGATCG
TCAGCGAGGCAGGGGGCAGCTAGCTGTTGAATCACCTCTTTTATGGACTGAAAGTGAATT
GGATTACCTGAATGGCAGCCCCATGAGGGATGAAGTTGTTGTCAGAGATGAGGGAATAAA
AAAAGAGTATAATGAGCTTGACACATTGTGGTTCATGGCAGGTTCATTGTTTAAGCAATA
CCCTTTTGATGTGCCTACTGAGGCATTTCCGTTTGAGATCTTCAAGCAGGCATTTGTTGC
GGTACAGTCTTGCGTGGTTCATTTGCAGAAGGTTAGTTTAGCACGAAGATTTGCACTAGT
TCCCTTGGGCCCACCACTATTGACGTACAAGAGCAACTGCAAAGCAATGCTGACAGCTGT
TGATGGTTCTGTTCGATTGCTGGTTGATCGGCCATACAAAGCAGGAGAACCAATAATCGT
TTGGTGTGGGCCACAACCAAACTCCAGGTTGCTTCTCAATTATGGTTTTGTTGATGAGGA
CAATCCATATGACCGCATAGCAATCGAGGCATCCCTAAACACTGAAGATCCTCAATACCA
AGAGAAGAGAATGGTTGCTCAAAGAAATGGAAAGCTTGCAATCCAAAAATTCCAAGTCTG
TGTAGGCAAAGAGAAGCAAACTATTTCTGAAATGCTGCCATACTTGAGACTAGGATACAT
TTCAGATCCAGATGAAATGCAATGTATACTTTCGTCGGAAGGTGATACATGTCCAGTTAG
TCCTTGCTCAGAGCGAGCTGTACTGGACCAACTTGTTGTGTACCTGAAATCAAGATTGGC
TGGTTATCCGACTAATTTGGATGAGGATGAAGCAATGTTGGCCGATGGCAGTTTGGAACC
AAAGAAAGAAGTTGCTACTAGACTTGTAAGGTTAGAGAAGAAAATGCTGCATGGCTGTCT
TGAGGCTGCTAACGAGTTCATAAGTGGCTTGCCTGATCATACCGTGTCACCTTGCCCTGC
ACTATATGCTCCTGAATTGAAATAAGGTAACCTGTTCGGGCGTAACAAGGATATTGTTGG
TCTCGAGTAGATCGGCAAACAGTTTTATTGCACAAAAGTGTGCATTGATTTGTTTTTTCA
GCCATGTAGATTCGATCTGTATGTTCACTATGATGATTGAGAGTTAGCATTGGTAATCTT
GTACTTCGTACATGCTCACTTTCCATTTTGTGCATAGAAGAACATGCAT

Homology of Contig U35_17460 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	Description
Rice v7	LOC_Os12g13460.1	510	protein\|SET domain-containing protein, putative, expressed
Brachypodium v1_2	Bradi4g39580.1	517
Arabidopsis v10	AT5G14260.3	514	Rubisco methyltransferase family protein \| chr5:4601139-4603873 FORWARD LENGTH=514