barSeed - Barley Seed Development Database

Probe CUST_39690_PI390587928

Source Contig U35_31754

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_39690_PI390587928	Hv_44K_v2	TCAACCATTCAGATATGTTCAGGTCTAAAAGGGTGCTTGAACTTGGAGCTGGTTACGGAT	496	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_55720.1	1059	2e-24	580 - 639	100	60 / 60	plus	None
MLOC	MLOC_55720.7	1342	2e-24	550 - 609	100	60 / 60	plus	None
MLOC	MLOC_55720.4	1424	2e-24	573 - 632	100	60 / 60	plus	None
MLOC	MLOC_55720.3	1213	2e-24	578 - 637	100	60 / 60	plus	None
MLOC	MLOC_55720.2	1260	2e-24	580 - 639	100	60 / 60	plus	None
MLOC	MLOC_55720.6	1292	2e-24	571 - 630	100	60 / 60	plus	None
MLOC	MLOC_55720.5	1417	2e-24	577 - 636	100	60 / 60	plus	None
JLOC1	JLOC1_35979.6	991	8e-25	559 - 618	100	60 / 60	plus
JLOC1	JLOC1_35979.5	1002	8e-25	559 - 618	100	60 / 60	plus
JLOC1	JLOC1_35979.4	1295	8e-25	559 - 618	100	60 / 60	plus
JLOC1	JLOC1_35979.3	1284	8e-25	559 - 618	100	60 / 60	plus
JLOC1	JLOC1_35979.2	1280	8e-25	555 - 614	100	60 / 60	plus
Harvest35	U35_31754	619	3e-25	497 - 556	100	60 / 60	plus

Contig Sequence (619 bp)

>U35_31754 619 Hv_44K_v2
CCCTTCCCAGTCCCCATGGGATCCTCCTCGCCTTCCCCGTCGCCGGAGCCGCCGCAGTCG
TCCGCTCCTGCCGGTGGAGCCTCCAATGCCAGCCTGCGGTGGCACATCCTCCGCCGCGCC
CTGCTCTCTCGCTCCGCCTCTCCCCACGCATCAGAGGGAACCTCTAAGGATCCGCAGGAG
AAAGGTGATACCAACAAAATTTCGAGGAAGACATCGCGTGGTTTTAATCTGATCAAGTGT
CACACAGTGCCAATTTCACAGCTAAATAAATCACAAGGAGATTCATTAAATAGAAATGAA
AATGGTGTTGAATGCCAAAGAGATGTCTGTGTTTGTTATAAGCTGCCCTGTGATGGTTCA
CCGGAACTTAATGTAATATACAGAAGAGATGATTCCCTTGAACTAAATGACATTGAAGCT
TCCAACCGATTTAATATTGACACTACTGGACTTGTATGTTGTTGGCCGTCTGAAGAGGTC
CTTGCCTTCTACTGTATCAACCATTCAGATATGTTCAGGTCTAAAAGGGTGCTTGAACTT
GGAGCTGGTTACGGATTGGCGGGACTTGTTATTGCAGCCAGTGCAAATGCTGGCGAGGTT
ATTATTTCTGATGGAAACC

Homology of Contig U35_31754 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os03g14020.2	211	4e-82	protein\|AGAP009131-PA, putative, expressed
Brachypodium v1_2	Bradi1g68320.1	347	5e-85
Arabidopsis v10	None