barSeed - Barley Seed Development Database

Probe CUST_39689_PI390587928

Source Contig U35_17461

barSeed

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_39689_PI390587928	Hv_44K_v2	TTCAAAACACGTTCTCTATTAAGTGCATCATTAGAAGTGCTACCCTGCTACCAAGGAGTG	409	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	AK357610	1927	2e-24	1623 - 1682	100	60 / 60	plus	ABC07244 ABC07245 ABC07246 ABC48713 ABC49860
Harvest21	ABC07246	820	3e-25	244 - 303	100	60 / 60	minus	ABC07246
Harvest35	U35_17461	704	3e-25	410 - 469	100	60 / 60	plus

Contig Sequence (704 bp)

>U35_17461 704 Hv_44K_v2
CTGAAATGCTGCCATACTTGAGACTAGGATACATTTCAGATCCAGATGAAATGCAATGTA
TACTTTCGTCGGAAGGTGATACATGTCCAGTTAGTCCTTGCTCAGAGCGAGCTGTACTGG
ACCAACTTGTTGTGTACCTGAAATCAAGATTGGCTGGTTATCCGACTAATTTGGATGAGG
ATGAAGCAATGTTGGCCGATGGCAGTTTGGAACCAAAGAAAGAAGTTGCTACTAGACTTG
TAAGGTTAGAGAAGAAAATGCTGCATGGCTGTCTTGAGGCTGCTAACGAGTTCATAAGTG
GCTTGCCTGATCATACCGTGTCACCTTGCCCTGCACTATATGCTCCTGAATTGAAATAAG
AGAAGCAAGCATGCAGTGAGATTCAATTATTGCTAGATGGACATATCACTTCAAAACACG
TTCTCTATTAAGTGCATCATTAGAAGTGCTACCCTGCTACCAAGGAGTGGTGGCACTCAC
CAGTGGTGGAGCCAGGAATTTGCTGCTAGGTAACCTGTTCGGGCGTAACAAGGATATTGT
TGGTCTCGAGTAGATCGGCAAACAGTTTTATTGCACAAAAGTGTGCATTGATTTGTTTTT
TCAGCCATGTAGATTCGATCTGTATGTTCACTATGATGATTGAGAGTTAGCATTGGTAAT
CTTGTACTTCGTACATGCTCACTTTCCATTTTGTGCATAGAAGA

Homology of Contig U35_17461 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os12g13460.1	510	1e-65	protein\|SET domain-containing protein, putative, expressed
Brachypodium v1_2	Bradi4g39580.1	517	1e-71
Arabidopsis v10	None