barSeed - Barley Seed Development Database

Probe CUST_39687_PI390587928

Source Contig U35_17462

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_39687_PI390587928	Hv_44K_v2	TGTATGGAAGATGTGGTAACTCTAGCTGCTCTTCTGCATTTGAGCATGTGTTTGTTGGTG	882	GeneList: darkturquoise MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	0.318	0.623	1.267	2.086	0.913	0.924
Raw	48.842	153.933	263.764	710.478	107.828	117.466

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_68842.6	1641	2e-24	1084 - 1143	100	60 / 60	plus	ABC07644
MLOC	MLOC_68842.5	4749	2e-24	2212 - 2271	100	60 / 60	plus	ABC07644
MLOC	MLOC_68842.4	2098	2e-24	1230 - 1289	100	60 / 60	plus	ABC07644
MLOC	MLOC_68842.1	1878	2e-24	1479 - 1538	100	60 / 60	plus	ABC07644
MLOC	MLOC_68842.3	1994	2e-24	1327 - 1386	100	60 / 60	plus	ABC07644
MLOC	MLOC_68842.2	1920	2e-24	1287 - 1346	100	60 / 60	plus	ABC07644
JLOC1	JLOC1_45587.1	2113	8e-25	1287 - 1346	100	60 / 60	plus
Harvest21	ABC07644	1529	3e-25	883 - 942	100	60 / 60	plus	ABC07644
Harvest35	U35_17462	1529	3e-25	883 - 942	100	60 / 60	plus

Contig Sequence (1529 bp)

>U35_17462 1529 Hv_44K_v2
GGCACCGCCCCGCGCGGGACGCCGAGGAGGATGAGGACGAGGAGGGCCGCGAGCAGCGGG
ACCGCTCGACGTGGGCCGAGGTGGTCTCCGAGAAGAAGGGCGGCGAGCCCCAGGAGGAGC
GCCGGGGTTCTCGGCCCTCCAGGCGGGAGGAGAGGAGGGAGGATGAGGGCTGGGAGAGGA
ACCAGGGCCGGAAGCAGCATCCATCTTCGCATGGTGGATCTCACAGCCAGTACCAAGGCG
AGGGCAGGAGTGATGGTGGTAGTCGGCTACCGCAGCAGCAGGCTCCAGCATACAGGCGAC
AGCAACAGGAGGAGGGAGAAGAAAAAAATGATGAAGGTTGGGAAACTGTAGGGGAGAAAA
AGCACCATGGAAGACCACAACAGTGTGAAGCATGGAACGGATACAAAAGGCCACCATCTG
AACAAGAGTACTCTGAAGATGTTGGTCAGATCCACCACGGCCTAAATGTAGAGCCTACCA
GGGAAGAGCTCAACAGCTTGACAGAAGCATGTAGCCGGCTGTGGGAGCTTGACATGAACC
GTCTTGTTCCTGGCAAGGACTACAGAATTGAATGTGGAGAGGGAAAGAAGGTTTATCAGA
AGGATGATATGGCATCTGAAAACTTGTTCAGCTGGCTAGGCGAGGATGTGCTTACCAAGC
CCACCTACTCTCGCTTCTGTGCGCTTCTTGACAATTACAACCCACACCAAGGGTACAAAG
AAGTTGTTACTCAGCAGGATAAGCACGAAGAAGCAGCATTTATTGAAGAGATTGCCCGGA
CAGCACCGATTAAGTACTTGCACCGGTATTTAGTGCTGAAGGGAGTCGCATCCCAAGACT
ATGATGACTTCAAGGCAATGCTGACATCCCTTTGGTTTACTTTGTATGGAAGATGTGGTA
ACTCTAGCTGCTCTTCTGCATTTGAGCATGTGTTTGTTGGTGAGATAAAGGAACAGAGAC
AAGGAGAGACCGAGGTCTCAGGATTCCATAACTGGATTCAGTTTTATCTGGAAGAAGCCA
AGGGAAATGTCGACTACCAAGGTTACATATTCCCAAGACGGCGTGGGGAATCACCTGATT
CGGAGACACAATTACTGACCGTGCAATTTGAGTGGCATGGTGTGCTGAAATCAGTATCAA
GCTCTTTGATTGGTGTTAGCCCTGAGTTCGAGCTGGCACTCTACACACTGTGCTTCTTTA
TGGGAGGGGAGGATAACCGTGTCGATATTGGCCCGTACACAGTGAACGTCAAGTGCTACC
GTATGGGTAACAACAAGATTGGGTCAGTCTTTCCCATTGCAGAGAACTGATTTGTGTGAT
GAGTGATGACTCACGACCTGCTTCTGCAGGTTTGTAATTCTTCGGTTTTTATCTTTTCCC
TTCACTTCGTGAGATTTACACTGTTGGTTATGAAAAAAAACCATTGTTCAGTCTGTTGTC
ACAATGCCACTACTTAAAACGTACCATATTACAAGTATACAGCACCAAAGTGGACGCTGA
TGCTGACTGANNAAAAAAAAAAAAAAAAA

Homology of Contig U35_17462 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os04g45910.1	520	0.0	protein\|placental protein 11 precursor, putative, expressed
Brachypodium v1_2	Bradi5g17240.1	466	0.0
Arabidopsis v10	AT4G17100.2	437	1e-162	EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Endoribonuclease XendoU (InterPro:IPR018998). \| chr4:9610164-9612513 REVERSE LENGTH=437