barSeed - Barley Seed Development Database

Probe CUST_39684_PI390587928

Source Contig U35_31757

barSeed

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_39684_PI390587928	Hv_44K_v2	AAACAGCATTGAACTACAGGCGGTGGACGAGGGCACTAGGATCATCACCCCACCAGCTGT	502	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	AK366089	4041	7e-23	968 - 1027	98	59 / 60	plus	ABC16765
MLOC	MLOC_13638.1	1526	7e-23	348 - 407	98	59 / 60	minus	None
JLOC1	JLOC1_9244.1	1593	4e-23	1133 - 1192	98	59 / 60	plus
Harvest35	U35_31757	586	3e-25	503 - 562	100	60 / 60	plus

Contig Sequence (586 bp)

>U35_31757 586 Hv_44K_v2
TGGACAACCTCCTCACCAACAACTGCAACCACTTCAGCAATGAGGTCGTCAAATTCCTCG
TTGGTTCCACGATTCCGAGCTACATCCTCGACCAGCCCAAGGAGGCGATGAAGAGCCCGA
TCGGCGCACTGATAATGCCGATGATTCAGGGGCTGGAGACAACATTGCGAGCAGGAGCTG
CTATACAGCCTCCACAATCCGTGCTTGCTCCTGCAGCAGCGGCGCAGACACAGCCTTCCA
CGAAAAGCACTCCGAATGAAACTGCAAAGGGTGTGATGGTGAGCAATGACAGCGGGATCA
TCCCGCATGTAGTGCTACCCACACCCAAGGGAGTGGGAGTGGTGCAGACACATCCCTCCA
CGAAGAACGACCAGATAGAATCGAGATCAGTCGCCGCCAATGAAGCTGGCGCTGATGAAA
TGGTGGACAGTGATTGTGGCATCATCCCGCCTCCGGCAAAACCAGCTACTCCAGCAGCAG
CGACGCAGACAGAGCCCTCCCTAAACAGCATTGAACTACAGGCGGTGGACGAGGGCACTA
GGATCATCACCCCACCAGCTGTGNCACCTGTTGCTCCAGCAGCGGC

Homology of Contig U35_31757 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	None
Brachypodium v1_2	None
Arabidopsis v10	None