barSeed - Barley Seed Development Database

Probe CUST_39682_PI390587928

Source Contig U35_31758

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_39682_PI390587928	Hv_44K_v2	ATCTTCCATAACAACGACACCAGGATGCAGAGCTACCACGTGGACGGGTACGCCGTGTTC	523	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	AK369118	2284	7e-23	1576 - 1635	98	59 / 60	plus	ABC35013
MLOC	MLOC_37856.4	1089	7e-23	352 - 411	98	59 / 60	minus	None
MLOC	MLOC_37856.2	1055	7e-23	318 - 377	98	59 / 60	minus	None
MLOC	MLOC_37856.3	1058	7e-23	321 - 380	98	59 / 60	minus	None
MLOC	MLOC_37856.1	1949	7e-23	344 - 403	98	59 / 60	minus	None
JLOC1	JLOC1_24558.2	1220	4e-23	822 - 881	98	59 / 60	plus
Harvest35	U35_31758	598	3e-25	524 - 583	100	60 / 60	plus

Contig Sequence (598 bp)

>U35_31758 598 Hv_44K_v2
ATACTCCTTCCTCCTCACCACCGACCAGAACGCCTGCTCCGACTACTACGTCGTCGCCAG
CGCCCGCATGGTCAACGAGTCCCTCTGGCAGCGCGTCACCGGCGTCGCCGTCCTCCGCTA
CTCCAACTCGGGCGGCGCGGCGTCCGGCCCGCTCCCGAACCCGCCCCAGGACCAGTTCGA
CAAGACGCTGTCCATGAACCAGGCGCGGTCTGTCCGCTGGAACCTGAGCGCCGGCGCGGC
GCGGCCCAACCCGCAGGGCTCCTTCCGGTACGCGTCCATCAACGTCACGCAGGCGTACCT
GCTGCGGAGCACCGCACCCGTGGAGATTGGCGGGAAGCGCAGGGCGGCGCTCAACGGTCT
GTCCTTCTCCCCGCCGGAGACGCCGCTGCGGCTCGCCGACGCGTATGGCGTGGAGGGCGC
CTACACGCTCGACTTCCCGGACCGGCCGGACCCGGACGCCGCCGCGCGCCATCGGGTCGC
GCGGTCCGTCATCTACGGCACCTACCGGGGGTTCATGGAGCTCATCTTCCATAACAACGA
CACCAGGATGCAGAGCTACCACGTGGACGGGTACGCCGTGTTCGTCGTCGGGATGGAC

Homology of Contig U35_31758 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os06g01490.1	594	1e-82	protein\|monocopper oxidase, putative, expressed
Brachypodium v1_2	Bradi1g52200.1	593	1e-80
Arabidopsis v10	AT4G12420.1	587	5e-80	\| Symbols: SKU5 \| Cupredoxin superfamily protein \| chr4:7349941-7352868 REVERSE LENGTH=587