barSeed - Barley Seed Development Database

Probe CUST_3967_PI390587928

Source Contig U35_25382

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_3967_PI390587928	Hv_44K_v2	CTAAGGGACAGAAGTCATCTGCGAATGCTAAGAAGGTTGACAGTCTTGAAGGAATGCATG	293	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	AK248780.1	2008	7e-23	1233 - 1292	98	59 / 60	plus	ABC18553 ABC43933
MLOC	MLOC_9867.2	926	7e-23	597 - 656	98	59 / 60	plus	ABC18553 ABC43933
MLOC	MLOC_9867.1	1766	7e-23	593 - 652	98	59 / 60	plus	ABC18553 ABC43933
JLOC1	JLOC1_6409.1	1483	4e-23	593 - 652	98	59 / 60	plus
Harvest21	ABC23339	353	3e-25	294 - 353	100	60 / 60	plus
Harvest35	U35_25382	353	3e-25	294 - 353	100	60 / 60	plus

Contig Sequence (353 bp)

>U35_25382 353 Hv_44K_v2
CGAGTGGCAACCTCGCCTCGTGGAAAGATTTCAAAGGAACAATGTTCTGCCTCCCAATGC
TATTCTCTCAGCTGGTTCTGCAAACTGTGCATGCACTGCTGGTGGGGGGCAGTTGTACAT
GTGGGGAAAAATGAAGACTACAGGCGATGACACGATGTATCCAAAGCCACTAATGGATTT
GAGTGGTTGGAACATCCGCTGCATGGCTTCTGGTACCATGCACCACGTTGTTGGCGCAAA
TGATTCTTGCATAAGCTGGGGTAATGCCCAATATGGANAGCTTGGTTACGGTCCTAAGGG
ACAGAAGTCATCTGCGAATGCTAAGAAGGTTGACAGTCTTGAAGGAATGCATG

Homology of Contig U35_25382 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os04g56720.1	550	5e-67	protein\|RCC2, putative, expressed
Brachypodium v1_2	Bradi5g25080.1	548	1e-72
Arabidopsis v10	AT1G19880.1	538	2e-63	Regulator of chromosome condensation (RCC1) family protein \| chr1:6900648-6903818 REVERSE LENGTH=538