barSeed - Barley Seed Development Database

Probe CUST_39662_PI390587928

Source Contig U35_43739

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_39662_PI390587928	Hv_44K_v2	ATTCTCAGGTTTTTGCTAGTGTACTGTCATCTGGCCCAACAACACATCGGTTGAATGCCA	175	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_9823.3	2557	2e-24	72 - 131	100	60 / 60	plus	None
MLOC	MLOC_9823.2	3119	2e-24	86 - 145	100	60 / 60	plus	None
MLOC	MLOC_9823.1	2298	2e-24	86 - 145	100	60 / 60	plus	None
MLOC	MLOC_9823.4	2881	9e-22	152 - 206	100	55 / 55	plus	None
JLOC1	JLOC1_6374.1	2856	8e-25	85 - 144	100	60 / 60	plus
Harvest21	ABC40773	235	3e-25	176 - 235	100	60 / 60	plus
Harvest35	U35_43739	235	3e-25	176 - 235	100	60 / 60	plus

Contig Sequence (235 bp)

>U35_43739 235 Hv_44K_v2
AGAAATGTGATGAGTCTGTAGTGCCTCAATCCTGCTGGCGTTTTTGAAGACATTGCAGAT
ATTACCCATTCAGTGATATTGACATCTGGCACACTCTCTCCAATGGGCTCCTTTGCATCT
GAACTCGGTGTACAATTTGATGCTTGCATGGAAGCTCCTCACGTAATTGATGCTGATTCT
CAGGTTTTTGCTAGTGTACTGTCATCTGGCCCAACAACACATCGGTTGAATGCCA

Homology of Contig U35_43739 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	None
Brachypodium v1_2	None
Arabidopsis v10	None