barSeed - Barley Seed Development Database

Probe CUST_39661_PI390587928

Source Contig U35_29447

barSeed

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_39661_PI390587928	Hv_44K_v2	TAAGAAACGTTGCACGGTGTTGGTGCTATGAGACAGGAGTTGCACTTGGTCATGAACTAA	166	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_10109.1	1177	7e-23	240 - 299	98	59 / 60	minus	ABC05301
MLOC	MLOC_10109.2	1143	7e-23	206 - 265	98	59 / 60	minus	ABC05301
MLOC	AK249835.1	2177	3e-21	1098 - 1157	97	58 / 60	plus	ABC05301
JLOC1	JLOC1_6591.1	1275	4e-23	879 - 938	98	59 / 60	plus
Harvest21	ABC28731	230	3e-25	167 - 226	100	60 / 60	plus
Harvest35	U35_29447	230	3e-25	167 - 226	100	60 / 60	plus

Contig Sequence (230 bp)

>U35_29447 230 Hv_44K_v2
GAGATTTTCCGGGGCGGCGCGGTGGTGCTTCANTGTGGAGCAGATTCTTTATCAGGTGAC
AGGTTGGGCTGCTTCAACCTATCCATTAAGGGGCACGCGGAGTGCGTGAGATTCATGAGG
TCCTTCAATGTTCCGGTGTTGCTGCTTGGTGGTGGTGGTTATACCATAAGAAACGTTGCA
CGGTGTTGGTGCTATGAGACAGGAGTTGCACTTGGTCATGAACTAACTGA

Homology of Contig U35_29447 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	None
Brachypodium v1_2	None
Arabidopsis v10	None