barSeed - Barley Seed Development Database

Probe CUST_39659_PI390587928

Source Contig U35_29449

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_39659_PI390587928	Hv_44K_v2	TGTTGGCAATAAGACCTAAGTCACCTGATTTTCCTGAGAGTCCATGGGAAAAATATGCCA	302	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	AK373995	2330	2e-24	1549 - 1608	100	60 / 60	plus	ABC12804 ABC23073
MLOC	MLOC_64403.2	900	2e-24	370 - 429	100	60 / 60	plus	ABC12804
MLOC	MLOC_64403.1	1144	2e-24	459 - 518	100	60 / 60	plus	ABC12804
JLOC1	JLOC1_42292.1	1522	8e-25	392 - 451	100	60 / 60	plus
Harvest21	ABC12804	1109	3e-25	303 - 362	100	60 / 60	plus	ABC12804
Harvest35	U35_29449	512	3e-25	303 - 362	100	60 / 60	plus

Contig Sequence (512 bp)

>U35_29449 512 Hv_44K_v2
TCGGATCAAAGGCCTTAAAGCTGTAGAGCTTTGCAAAATTCAAGGTCTTTGCTATACAAC
TTATAAAGGGTCTGGTGACAGCTGCTGTAAATTAACACTTCAATTCATTGACAGCACTTC
AAGCGGATTTAACAGAGAGTTTGTAATCACATTGCCTGAGCTGGTTGGCTTCCCCGATTT
TCTTGTGGAAAGAACACGGTTTGAAGCTGCTGTTGCGCAGAACTGGACTATCCGAGATAA
GTGCAAAGTTTGGTGGGCTGATGGTGGTGCAGAGGGGGGAGGAAGTTGGTGGGAGGGACG
TGTGTTGGCAATAAGACCTAAGTCACCTGATTTTCCTGAGAGTCCATGGGAAAAATATGC
CATACAATACAAGACTGACGGTTCAGAACATTTACATAGCCCCTGNGAGCTCTATGACAT
TGATACCCCATTGGTTCCATGGAAACATCCACATATTGATTCCAGTGTCAAGAATAAATT
GTTATCAGCAATGACCACTTTACAGAACAAGT

Homology of Contig U35_29449 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os03g19340.1	1627	7e-68	protein\|WD domain, G-beta repeat domain containing protein, expressed
Brachypodium v1_2	Bradi5g22017.1	1618	3e-69
Arabidopsis v10	AT5G49430.1	1677	5e-56	WD40/YVTN repeat-like-containing domain;Bromodomain \| chr5:20037338-20045454 REVERSE LENGTH=1677